View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3662_low_3 (Length: 321)
Name: NF3662_low_3
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_low_3 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0312 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 10680 - 10984
Alignment:
| Q |
1 |
aaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10680 |
aaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
10779 |
T |
|
| Q |
101 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10780 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
10879 |
T |
|
| Q |
201 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
10979 |
T |
|
| Q |
301 |
gaatg |
305 |
Q |
| |
|
||||| |
|
|
| T |
10980 |
gaatg |
10984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 419891 - 419587
Alignment:
| Q |
1 |
aaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419891 |
aaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
419792 |
T |
|
| Q |
101 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419791 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
419692 |
T |
|
| Q |
201 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419691 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
419592 |
T |
|
| Q |
301 |
gaatg |
305 |
Q |
| |
|
||||| |
|
|
| T |
419591 |
gaatg |
419587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 975270 - 975574
Alignment:
| Q |
1 |
aaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975270 |
aaggtttgtgtaacatcattggagtctatggttgatttcacgacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagta |
975369 |
T |
|
| Q |
101 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975370 |
atttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgtttta |
975469 |
T |
|
| Q |
201 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975470 |
ctgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatca |
975569 |
T |
|
| Q |
301 |
gaatg |
305 |
Q |
| |
|
||||| |
|
|
| T |
975570 |
gaatg |
975574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 936468 - 936771
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaat-- |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||| | | |
|
|
| T |
936468 |
tttgtgtaacatcattggaatctatggttgatttcactacttcgaaacttggaaacaatgtcgaagctgtttcaacagaagtgaaaaaagaaagcagtga |
936567 |
T |
|
| Q |
103 |
-ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttac |
201 |
Q |
| |
|
|| ||| ||||| ||| ||| || |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
936568 |
cttgcaagaatatgtaatggcaaaaggtgtgaagaaattgggagaaaagaataaagctgtagtgtgtcacaaagagagttacccttatgcagttttttac |
936667 |
T |
|
| Q |
202 |
tgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcag |
301 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
936668 |
tgtcataaaactgattcaactaaagtttactctgtgcctttggaaggtgttgatggaagtagagttaaagctgttgctgtgtgtcacactgatacttcac |
936767 |
T |
|
| Q |
302 |
aatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
936768 |
aatg |
936771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 960349 - 960652
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaat-- |
102 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| |||||||||||||||||| | ||| | |||||| |
|
|
| T |
960349 |
tttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatgg |
960448 |
T |
|
| Q |
103 |
-ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttac |
201 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
960449 |
tttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttac |
960548 |
T |
|
| Q |
202 |
tgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcag |
301 |
Q |
| |
|
||||| ||||| ||| ||||| ||| |||||||||||| ||||| |||| |||||||| || |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
960549 |
tgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcag |
960648 |
T |
|
| Q |
302 |
aatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
960649 |
aatg |
960652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 942388 - 942691
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaat-- |
102 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| |||||||||||||||||| | ||| | |||||| |
|
|
| T |
942388 |
tttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatgg |
942487 |
T |
|
| Q |
103 |
-ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttac |
201 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
942488 |
tttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttac |
942587 |
T |
|
| Q |
202 |
tgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcag |
301 |
Q |
| |
|
||||| ||||| ||| ||||| ||| |||||||||||| ||||| |||| |||||||| || |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
942588 |
tgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcag |
942687 |
T |
|
| Q |
302 |
aatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
942688 |
aatg |
942691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 971658 - 971961
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaat-- |
102 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| |||||||||||||||||| | ||| | |||||| |
|
|
| T |
971658 |
tttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatgg |
971757 |
T |
|
| Q |
103 |
-ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttac |
201 |
Q |
| |
|
|| ||||||||| |||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
971758 |
tttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttac |
971857 |
T |
|
| Q |
202 |
tgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcag |
301 |
Q |
| |
|
||||| ||||| ||| ||||| ||| |||||||||||| ||||| |||| |||||||| || |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
971858 |
tgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcag |
971957 |
T |
|
| Q |
302 |
aatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
971958 |
aatg |
971961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 949377 - 949680
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaat-- |
102 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| ||| |||| ||||||||| | ||| | |||||| |
|
|
| T |
949377 |
tttgtgtaacttcattggaatctatggttgatttcactatttcaaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatgg |
949476 |
T |
|
| Q |
103 |
-ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttac |
201 |
Q |
| |
|
|| ||||||||| |||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
949477 |
tttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttacacagttttttac |
949576 |
T |
|
| Q |
202 |
tgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcag |
301 |
Q |
| |
|
||||| ||||| ||| |||| ||| |||||||||||| ||||| |||| |||||||| || |||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
949577 |
tgtcataaaactgattcaaccgaagtttactctgtgcccttggaaggtgttgatggaaacatggttaaaactattgttgtttgtcacactgatacatcag |
949676 |
T |
|
| Q |
302 |
aatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
949677 |
aatg |
949680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 909718 - 910015
Alignment:
| Q |
5 |
tttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaattt |
104 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||| || ||||| || |||||||| |||||||||||||||| || ||||||| ||| |
|
|
| T |
909718 |
tttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaaacaatgttgacactgtttcaacagaagtaaatggagaaagtggttt |
909817 |
T |
|
| Q |
105 |
acaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttactgt |
204 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||| ||||| ||| |||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
909818 |
acaacaatatgtaatagcaaacggagtgaagaaaatgggagagaa---caatttggttgtgtgccacaaacggaattacccttatgcagttttttactgt |
909914 |
T |
|
| Q |
205 |
cacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcagaat |
304 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||| | || ||| ||||||| ||| ||| |
|
|
| T |
909915 |
cacaaaacagatgcaactaaagtttactctgtgcctttggaaggtgctgatggaagtagagttaaagctgttgctatttgccactctgatacttcacaat |
910014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 924252 - 924548
Alignment:
| Q |
6 |
ttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaattta |
105 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| || || |
|
|
| T |
924252 |
ttgtgtaacatcattagagtcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtgaacaaagaaagtgatata |
924351 |
T |
|
| Q |
106 |
caacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttactgtc |
205 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||||||| || | | |||| || ||| |||||||||| |||| |
|
|
| T |
924352 |
caacaatatataatagcaaaaggagttaagaagttgggtg---agaacaaaattgttgtgtgccatccaatggattatccatatacagtgttttattgtc |
924448 |
T |
|
| Q |
206 |
acaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcagaatg |
305 |
Q |
| |
|
||||| | | ||||||||| ||||| | ||||| |||| |||| |||||||| || |||||||||| ||||| | || ||| ||||||| ||| |||| |
|
|
| T |
924449 |
acaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatg |
924548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 916201 - 916344
Alignment:
| Q |
6 |
ttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaattta |
105 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| ||||||||||||| || | |
|
|
| T |
916201 |
ttgtgtaacatcattagaatcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagcgaacaaagaaagtgataaa |
916300 |
T |
|
| Q |
106 |
caacaatatacaatagcatctggagtgaagaagttgggtgagaa |
149 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
916301 |
caacaatatataatagcaaaaggagttaagaagttgagtgagaa |
916344 |
T |
|
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