View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3663_high_1 (Length: 571)
Name: NF3663_high_1
Description: NF3663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3663_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Complemental strand, 47582758 - 47582217
Alignment:
| Q |
11 |
cacagaaagtagaaacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582758 |
cacagaaagtagaaacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
47582659 |
T |
|
| Q |
111 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582658 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
47582559 |
T |
|
| Q |
211 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582558 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggt |
47582459 |
T |
|
| Q |
311 |
cgagctgaaaggcgaggatttgtgggtgggggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582458 |
cgagctgaaaggcgaggatttgtgggtggaggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgg |
47582359 |
T |
|
| Q |
411 |
gatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatggcatcactaagacaccagctgcagttctctgcagataggca |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582358 |
gatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatggcatcactaagacaccagctgcagttctctgcagataggca |
47582259 |
T |
|
| Q |
511 |
cgggaggcaccaagcaccgccatatactttttggttttctgt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582258 |
tgggaggcaccaagcaccgccatatactttttggttttctgt |
47582217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 183 - 552
Target Start/End: Complemental strand, 47572901 - 47572519
Alignment:
| Q |
183 |
ttgctagatatagtaatcatgggttgacagtaatatatgg-tatgat------tacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaag |
275 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| | |||| ||||||||| ||||| ||||| | |||||||||| ||| |
|
|
| T |
47572901 |
ttgctagatatagtagtcatgggttgacagtaatatatgggtatgatattaacttgattgctgtcttattgtgtcacaaatgttagtaaaattaagaaaa |
47572802 |
T |
|
| Q |
276 |
tgtaaatgagggataatcaaaagtttaaacctggtcgagctgaaaggcgaggatttgtgggtgggggcagca------cccaagaattattgtcgtctgc |
369 |
Q |
| |
|
| || |||| |||| ||||||| ||||||||||| |||||||| |||||| |||| ||||| || || |||||| | ||||| || ||| |
|
|
| T |
47572801 |
tatatatgaaggattttcaaaagcttaaacctggtggagctgaagcacgaggaattgttggtggtggaggcggtggcccccaagcaacattgttgtgtgc |
47572702 |
T |
|
| Q |
370 |
cttgtggaatggatataattcaaatctaacaccacaactgggatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatg |
469 |
Q |
| |
|
||||||||| |||| ||| |||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
47572701 |
cttgtggaaaggatttaagtcaaatttaagaccacaactgggataaaatattgctcctccagattttcctctgcaacaactagttggaatttctgctatg |
47572602 |
T |
|
| Q |
470 |
gcatcactaagacaccagctgcagttctctgcagataggcacgggaggcaccaagcaccgccatatactttttggttttctgt |
552 |
Q |
| |
|
||||| |||||||||||||| ||||| |||| ||||||| | |||| ||||||| || ||||||| ||||||||| ||||| |
|
|
| T |
47572601 |
gcatcgctaagacaccagctacagttttctgaagataggtatgggacgcaccaaacataaccatatagtttttggttgtctgt |
47572519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 47570847 - 47570697
Alignment:
| Q |
81 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttcaattcttgttctc------ccaagttcttacagaag- |
173 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||| || |||||| |
|
|
| T |
47570847 |
taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttcagttcacgttctcaatgtaccaagttattgcagaaga |
47570749 |
T |
|
| Q |
174 |
-atatatcttttgctagatatagtaatcatgggttgacagtaatatatggta |
224 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47570748 |
tatatatctcttgctagatatagtatccatgggttgacagtgatatatggta |
47570697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
| Q |
56 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
109 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
47573269 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
47573217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
| Q |
81 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt |
137 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
47566304 |
taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt |
47566249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University