View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3663_low_2 (Length: 336)

Name: NF3663_low_2
Description: NF3663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3663_low_2
NF3663_low_2
[»] chr4 (26 HSPs)
chr4 (19-336)||(27497081-27497398)
chr4 (171-336)||(27415685-27415851)
chr4 (215-335)||(27475534-27475654)
chr4 (215-335)||(27503987-27504107)
chr4 (171-335)||(27490025-27490189)
chr4 (177-335)||(27412729-27412887)
chr4 (177-335)||(27420473-27420631)
chr4 (215-336)||(27563301-27563422)
chr4 (220-335)||(27524589-27524704)
chr4 (178-335)||(27569967-27570124)
chr4 (215-335)||(27468282-27468402)
chr4 (177-335)||(27425877-27426035)
chr4 (215-335)||(27423287-27423407)
chr4 (215-335)||(27508917-27509037)
chr4 (211-318)||(27506780-27506887)
chr4 (215-335)||(27514956-27515076)
chr4 (215-318)||(27478838-27478941)
chr4 (221-336)||(27585752-27585867)
chr4 (215-336)||(27565906-27566027)
chr4 (226-318)||(27485909-27486001)
chr4 (284-336)||(27527225-27527277)
chr4 (19-82)||(27569819-27569882)
chr4 (19-73)||(27423534-27423588)
chr4 (260-332)||(27526112-27526184)
chr4 (260-335)||(27431148-27431223)
chr4 (286-336)||(27554373-27554423)
[»] chr5 (2 HSPs)
chr5 (207-326)||(1754762-1754881)
chr5 (215-336)||(1756712-1756833)
[»] chr3 (11 HSPs)
chr3 (211-335)||(50910025-50910149)
chr3 (259-336)||(38043967-38044044)
chr3 (260-335)||(50904792-50904867)
chr3 (181-335)||(55084851-55085005)
chr3 (259-323)||(38024874-38024938)
chr3 (259-323)||(38031326-38031390)
chr3 (259-335)||(38036792-38036868)
chr3 (259-335)||(50911868-50911944)
chr3 (259-325)||(38028765-38028831)
chr3 (286-335)||(38033805-38033854)
chr3 (250-335)||(48840702-48840786)
[»] chr8 (2 HSPs)
chr8 (287-336)||(21634607-21634656)
chr8 (259-323)||(21607295-21607359)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 27497081 - 27497398
Alignment:
Q  19 aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaacaaaatatacatactgcataaacttgtcaatctaatggtaatttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27497081 aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaacaaaaaatacatactgcataaacttgtcaatctaatggtaatttc 27497180  T
Q  119 tcttcccatcattgctatttgattagatgcctagtatacaaaaatgcctctactctagtctactaaactacgtcagtctctttccatgtgaaatttatag 218  Q
    | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27497181 ttttcccatcattgcaatttgattagatgcctagtatacaaaaatgtctctactctagtctactaaactacgtcagtctctttccacgtgaaatttatag 27497280  T
Q  219 cccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27497281 cccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttga 27497380  T
Q  319 ctcaacaaatcttgaaac 336  Q
    |||||||||| |||||||    
T  27497381 ctcaacaaatattgaaac 27497398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 171 - 336
Target Start/End: Complemental strand, 27415851 - 27415685
Alignment:
Q  171 ctctagtctactaaactacgtcagtctctttcca-tgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaat 269  Q
    |||||||||||||||||| ||||||||||||    ||| | ||| |||  || ||||||||||| |||||| |||| ||||||| ||| |||||||||||    
T  27415851 ctctagtctactaaactatgtcagtctcttttttgtgttagattcatattccgttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaat 27415752  T
Q  270 gatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaac 336  Q
    | ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27415751 ggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaac 27415685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 27475534 - 27475654
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    ||||||||||||||| |||||||||  |||||||||||| ||| | |||||||||| ||||||||||  |||||||||||||||||||||||||||| ||    
T  27475534 atagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggc 27475633  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
    |||||||||||| ||||||||    
T  27475634 ttgactcaacaagtcttgaaa 27475654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 27504107 - 27503987
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| |||||||||| |||||||||| |||||||||||| ||| |||||||||||| ||||||||||  | |||||||||||||||||||||||||| ||    
T  27504107 atagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggc 27504008  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
    |||||||||||| ||||||||    
T  27504007 ttgactcaacaagtcttgaaa 27503987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 335
Target Start/End: Complemental strand, 27490189 - 27490025
Alignment:
Q  171 ctctagtctactaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatg 270  Q
    |||||||||||||||||| ||||||||||| |  | |||| |||| |||||||| ||||||||| |||||  ||||||| ||| |||  ||  |||||||    
T  27490189 ctctagtctactaaactatgtcagtctcttgcagtatgaagtttacagcccattaaagcgagaaattatgtattggaagtcatcttcgttgacaggaatg 27490090  T
Q  271 atgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
     ||||||||||  | |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27490089 gtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaa 27490025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 27412887 - 27412729
Alignment:
Q  177 tctactaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgagg 276  Q
    |||||||||||| |||||| |||||   ||| | ||| ||||||||||| ||||||| |||||  |||| ||||||| ||| |||||||||||| |||||    
T  27412887 tctactaaactatgtcagtttcttttggtgtcagattcatagcccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgagg 27412788  T
Q  277 ccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||||  | ||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  27412787 ccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaa 27412729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 27420631 - 27420473
Alignment:
Q  177 tctactaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgagg 276  Q
    |||||||||||| ||||| ||||||   | | | ||| |||||||||| |||| |||||||||  |||| ||||||| ||| |||||||||||| |||||    
T  27420631 tctactaaactatgtcagactcttttggtctcagattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgagg 27420532  T
Q  277 ccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||||  ||||||||||||||||||||||||||||| ||||||||| |||  |||||||    
T  27420531 ccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaa 27420473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 27563301 - 27563422
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    ||||| |||||||||||||||||||  |||| ||| ||| |||||||||||||||  ||||||||||  | ||||||||||||||||||||||| || ||    
T  27563301 atagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggc 27563400  T
Q  315 ttgactcaacaaatcttgaaac 336  Q
    |||||||| |||||||||||||    
T  27563401 ttgactcagcaaatcttgaaac 27563422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 27524704 - 27524589
Alignment:
Q  220 ccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgac 319  Q
    ||||||||||  ||||||||  |||||||||||| ||| ||||| |||||| ||||||||||  | |||||||||||||||||||||||||||||||||     
T  27524704 ccattcaagcatgaagttatatgttggaagacatcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgat 27524605  T
Q  320 tcaacaaatcttgaaa 335  Q
    ||||||| ||||||||    
T  27524604 tcaacaagtcttgaaa 27524589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 178 - 335
Target Start/End: Original strand, 27569967 - 27570124
Alignment:
Q  178 ctactaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggc 277  Q
    ||||||||||| |||||||||||    ||| | ||| ||| ||| |||| |||||| |||||  |||| |||| || ||| |||||||||||| ||||||    
T  27569967 ctactaaactatgtcagtctcttctggtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgaggc 27570066  T
Q  278 cacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    ||||  |||||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  27570067 cacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaa 27570124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 27468282 - 27468402
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| |||||||||  |||| ||||  |||||||||||| ||| |||||||||||| ||||||||||  ||||||||||||||||||| |||||||| |     
T  27468282 atagtccattcaaggaagaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcgga 27468381  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
    |||||||||||| ||||||||    
T  27468382 ttgactcaacaagtcttgaaa 27468402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 27426035 - 27425877
Alignment:
Q  177 tctactaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgagg 276  Q
    |||||||||||| |||||||| |||   ||| | ||| |||| |||||||||||||| || ||  |||| || ||||  || |||||||||||| |||||    
T  27426035 tctactaaactatgtcagtctgttttggtgtcagattcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgagg 27425936  T
Q  277 ccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||||  |||||||||||||||||||||||||||||  ||||||||| || ||||||||    
T  27425935 ccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaa 27425877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 27423407 - 27423287
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| ||||||||| ||||||||||  ||||||| |||| ||| |||||||||| | ||||||||||  |||||||||  || |||||||||||||| ||    
T  27423407 atagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggc 27423308  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
    |||||||||||| ||||||||    
T  27423307 ttgactcaacaattcttgaaa 27423287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 27509037 - 27508917
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| ||||| |||| |||||||||  ||||||| |||| ||| | ||| |||||| |||||||||| || |||||||||||||||||||||||||||||    
T  27509037 atagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagc 27508938  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
     ||| ||||||| ||||||||    
T  27508937 ctgattcaacaagtcttgaaa 27508917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 27506887 - 27506780
Alignment:
Q  211 atttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcct 310  Q
    |||||| || ||||||||| |||||||||| |||| ||||||| |||||||||||||||| |||| |||||  ||||||||||||||||||| ||||| |    
T  27506887 atttatggctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttctt 27506788  T
Q  311 cagcttga 318  Q
    | ||||||    
T  27506787 ccgcttga 27506780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 27515076 - 27514956
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| |||||||||  |||| ||||  | |||||||||| ||| || ||||||||| ||||||||||  ||||||||||||||||||| |||||||| |     
T  27515076 atagtccattcaaggaagaaattatatgctggaagacatcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcgga 27514977  T
Q  315 ttgactcaacaaatcttgaaa 335  Q
    |||||||||||| ||||||||    
T  27514976 ttgactcaacaagtcttgaaa 27514956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 27478838 - 27478941
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    ||||||||||||||| |||||||||  ||||||| |||| ||| | |||||||||| ||||||||||  ||||||||||||||||||| ||||| || ||    
T  27478838 atagcccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgc 27478937  T
Q  315 ttga 318  Q
    ||||    
T  27478938 ttga 27478941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 336
Target Start/End: Complemental strand, 27585867 - 27585752
Alignment:
Q  221 cattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgact 320  Q
    ||||||||||| |||||||  ||| |||| ||| ||| |||||||||||| |||| || ||  | ||||||||||||||||||||||| || ||||||||    
T  27585867 cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgact 27585768  T
Q  321 caacaaatcttgaaac 336  Q
    || |||||||||||||    
T  27585767 catcaaatcttgaaac 27585752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 27565906 - 27566027
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    |||| |||||||||| |||||||||  |||||||||||| |||    ||||||||| ||||||||||  | |||||||||||||||  |||||||||| |    
T  27565906 atagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaac 27566005  T
Q  315 ttgactcaacaaatcttgaaac 336  Q
    |||  ||| ||| |||||||||    
T  27566006 ttgtatcagcaagtcttgaaac 27566027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 27485909 - 27486001
Alignment:
Q  226 aagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttga 318  Q
    |||| |||||||| | |||| |||||   |||||||||||||||| ||||||||||  ||||||||||||||||||| ||||| || ||||||    
T  27485909 aagcaagaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttga 27486001  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 27527277 - 27527225
Alignment:
Q  284 tgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaac 336  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  27527277 tgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaac 27527225  T

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Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 27569819 - 27569882
Alignment:
Q  19 aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaacaaaatata 82  Q
    ||||||||||||||| |||| |||| ||||||||| |||||| ||| |||||||||||||||||    
T  27569819 aataaaccaaaaacagagaggagatatttgagtagtcgaattcattgtcattaaacaaaatata 27569882  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27423588 - 27423534
Alignment:
Q  19 aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaa 73  Q
    ||||||||||||||||| || |||||||||||||| |||||| ||| ||||||||    
T  27423588 aataaaccaaaaacacaaaggagatgtttgagtagtcgaattcattgtcattaaa 27423534  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 27526112 - 27526184
Alignment:
Q  260 tgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttg 332  Q
    ||||||||||  |||| ||||| || |||||||||||| |||| | |||||||||||| |||||||| |||||    
T  27526112 tgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttg 27526184  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 27431148 - 27431223
Alignment:
Q  260 tgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    ||||||||||  |||| ||||| || ||||| ||||||||||| | |||||| |||||| ||||||| ||||||||    
T  27431148 tgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaa 27431223  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 27554423 - 27554373
Alignment:
Q  286 ggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaac 336  Q
    ||||||||||||||||| | ||||||||||||| ||| ||| |||||||||    
T  27554423 ggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaac 27554373  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 1754881 - 1754762
Alignment:
Q  207 tgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactct 306  Q
    |||||||||||||||||| |||| |||||||||   || |||||||| ||| |||||| ||||| ||||||||||  | |||||||||||||||||||||    
T  1754881 tgaaatttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactct 1754782  T
Q  307 tcctcagcttgactcaacaa 326  Q
    ||| ||||||||||||||||    
T  1754781 tccgcagcttgactcaacaa 1754762  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 1756712 - 1756833
Alignment:
Q  215 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagc 314  Q
    ||||||||||||||| ||| || ||  |||||||| ||| ||| |||||||||||| ||||||||||  |||| |||||||||||||| ||||| |||||    
T  1756712 atagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagc 1756811  T
Q  315 ttgactcaacaaatcttgaaac 336  Q
    |||||||||||| | |||||||    
T  1756812 ttgactcaacaagtattgaaac 1756833  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 335
Target Start/End: Complemental strand, 50910149 - 50910025
Alignment:
Q  211 atttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcct 310  Q
    ||||||||| |||| ||||||||||| ||  |   |||||||| ||| |||||||||||  ||||||||||  | ||||||||||||||||| |||||||    
T  50910149 atttatagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcct 50910050  T
Q  311 cagcttgactcaacaaatcttgaaa 335  Q
    |  ||||| ||||||| | ||||||    
T  50910049 ccacttgattcaacaagttttgaaa 50910025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 38044044 - 38043967
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaac 336  Q
    |||||||||||  ||||||| ||  | ||||||||||||||||| |||||||| |||||||||| ||| |||||||||    
T  38044044 gtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaac 38043967  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 50904792 - 50904867
Alignment:
Q  260 tgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    ||||||||||| ||||||||||  | |||||||||||||| || || ||||| ||| |||||||||| ||||||||    
T  50904792 tgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaa 50904867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 55085005 - 55084851
Alignment:
Q  181 ctaaactacgtcagtctctttccatgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatgatgaggccac 280  Q
    |||| ||| |||| ||||||||  ||| | ||||||||  |||| ||||||||||| ||  |   ||| |||| ||| |||||||||||  |||||||||    
T  55085005 ctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccac 55084906  T
Q  281 ctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |  | |||||||| |||||||| |||||||| ||  |||||||||| ||||||||    
T  55084905 ccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaa 55084851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 38024874 - 38024938
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaa 323  Q
    |||||||||||  ||||||||||  | || |||||||||||||| |||||||| |||||||||||    
T  38024874 gtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaa 38024938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 38031326 - 38031390
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaa 323  Q
    |||||||||||  ||||||||||  | || |||||||||||||| |||||||| |||||||||||    
T  38031326 gtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaa 38031390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 38036792 - 38036868
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||||||||||  ||||||| ||  | ||||| |||||||| || |||||||| |||||||||||||||| ||||||    
T  38036792 gtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaa 38036868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 50911868 - 50911944
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||||||||||  | ||||||||  | || |||||||||||||| |||||||| |||||||||||||| | ||||||    
T  50911868 gtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaa 50911944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 38028765 - 38028831
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaaca 325  Q
    |||||||||||  ||||||| ||  | ||||| ||||||||||| |||||||| |||||||||||||    
T  38028765 gtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaaca 38028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 38033805 - 38033854
Alignment:
Q  286 ggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    ||||| ||||||||||| |||||||| |||||||||||||| | ||||||    
T  38033805 ggatggtcatatccaaattcttcctcggcttgactcaacaagttttgaaa 38033854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 48840702 - 48840786
Alignment:
Q  250 acattttcagtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaa 335  Q
    |||| ||| |||||||||||  ||||||||||  | ||||||||||||||||| |||| |||  ||| ||||||||| ||||||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaa 48840786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 21634656 - 21634607
Alignment:
Q  287 gatgatcatatccaaactcttcctcagcttgactcaacaaatcttgaaac 336  Q
    |||||||||||||||| |||||||| |||||||||| ||| |||||||||    
T  21634656 gatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaac 21634607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 21607295 - 21607359
Alignment:
Q  259 gtgcaaggaatgatgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaa 323  Q
    ||||||||||   ||||||||||  | || |||||||||||||| |||||||| |||||||||||    
T  21607295 gtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaa 21607359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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