View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3664_high_4 (Length: 368)
Name: NF3664_high_4
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3664_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36695634 - 36695413
Alignment:
| Q |
1 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaagccagcaaatggttatggtgatgattctgacacattaaggggatttgaat |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695634 |
caaaggtcaacaatgcttgaagtttacaacaatatgagcaatgacaggaagccaccaaatggttatggtgatgattctgacacattaaggggatttgaat |
36695535 |
T |
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| Q |
101 |
atgcagccataggttttgtaatgtcgtaaaaaagtaagtatcattgtgagaaaatgttgtataatatgtataatacgtctcccccacgccacatatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695534 |
atgcagccataggttttgtaatgtcgtaaaaaagtaagtatcattgtgagaaaaagttgtataatatgtataatacgtctcccccacgccacatatatta |
36695435 |
T |
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| Q |
201 |
aaaaagtgaacatgaactccat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36695434 |
aaaaagtgaacatgaactccat |
36695413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36676105 - 36676002
Alignment:
| Q |
1 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaagccagcaaatggttatggtgatgattctgacacattaaggggatttgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
36676105 |
caaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacacattaaggggattagaat |
36676006 |
T |
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| Q |
101 |
atgc |
104 |
Q |
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|||| |
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| T |
36676005 |
atgc |
36676002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 36675852 - 36675762
Alignment:
| Q |
164 |
atatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaactccattttcctctccatcctctacatctccctcatacttgta |
259 |
Q |
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| T |
36675852 |
atatgtataatatgtctcccccac-----atatattaaaaaattgaacatgaactccattttcctctccatcctctacatctccctcatacttgta |
36675762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36673350 - 36673247
Alignment:
| Q |
1 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaagccagcaaatggttatggtgatgattctgacacattaaggggatttgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | || | || ||||||||| |||||||||||| |||| |
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| T |
36673350 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaat |
36673251 |
T |
|
| Q |
101 |
atgc |
104 |
Q |
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|||| |
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| T |
36673250 |
atgc |
36673247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 36675668 - 36675621
Alignment:
| Q |
302 |
cctcctcgctgaactcagatcctccacggttgttgtagggactatggt |
349 |
Q |
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| T |
36675668 |
cctcctcgctgaactcagatcctccacggttgttgtagggactatggt |
36675621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 36695347 - 36695298
Alignment:
| Q |
300 |
cacctcctcgctgaactcagatcctccacggttgttgtagggactatggt |
349 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36695347 |
cacctcctcgctgaactcagatcctctacggttgttgtagggactatggt |
36695298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36683781 - 36683740
Alignment:
| Q |
1 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaat |
42 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
36683781 |
caaagaccaacaatgcttgaagtttacaacaatttgagcaat |
36683740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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