View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3664_high_9 (Length: 242)
Name: NF3664_high_9
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3664_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 49885637 - 49885852
Alignment:
| Q |
18 |
tacaaaaccatcacatgaaaaatctgtaaatataattctttccatttctatttgtatttctttcaacatacatgaataggtggaagtggaaccctcttnn |
117 |
Q |
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| T |
49885637 |
tacaaaaccatcacatgaaaaatctgtaaatataattctttccatttctatttgtatttctttcaacat----gaataggtggaa------ccctcttaa |
49885726 |
T |
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| Q |
118 |
nnnnn-tgaataggcagagcaacaagatcctattttccgggaaatctcataaaaatatttaatgctaaatcacgtaataaggaaatctaatttaaaagga |
216 |
Q |
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| T |
49885727 |
aaaaaatgaataggcagagcaacaagatcctattttccgggaaatctcataaaaagatttaatgctaaatcacgtaataaggaaatctaatttaaaagga |
49885826 |
T |
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| Q |
217 |
gacaatataaatttgcattgaattat |
242 |
Q |
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||||||||||||| |||||||||||| |
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| T |
49885827 |
gacaatataaattcgcattgaattat |
49885852 |
T |
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