View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3664_low_11 (Length: 240)
Name: NF3664_low_11
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3664_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 10982431 - 10982638
Alignment:
| Q |
14 |
aaaggggaatggtggtaagaaattgggcaccacaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgtt |
113 |
Q |
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| T |
10982431 |
aaaggggaatggtggtaagaaattgggcaccacaaggtgcaatattaaagcatgactcgatcggtggattcgtgacacattgtggatggaactcggtgtt |
10982530 |
T |
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| Q |
114 |
ggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttg |
213 |
Q |
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| T |
10982531 |
ggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatgcagaacaaaggctgaacaaggtgattttggttgaggagatgaaggttgctttg |
10982630 |
T |
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| Q |
214 |
gaactgaa |
221 |
Q |
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||| |||| |
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| T |
10982631 |
gaattgaa |
10982638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 10968477 - 10968688
Alignment:
| Q |
10 |
aagcaaaggggaatggtggtaagaaattgggcaccacaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcgg |
109 |
Q |
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| T |
10968477 |
aagcaaaagggaatggtggcaagaaattgggcaccacaaggtgcaatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcgg |
10968576 |
T |
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| Q |
110 |
tgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgc |
209 |
Q |
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| T |
10968577 |
tgttggaagctatttgtgaaggagtgcctatggtggcgtggccattatatgcagaacaaaggctgaacaaggtgattttggttgacgagatgaaggttgc |
10968676 |
T |
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| Q |
210 |
tttggaactgaa |
221 |
Q |
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|||||||||||| |
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| T |
10968677 |
tttggaactgaa |
10968688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 11002656 - 11002870
Alignment:
| Q |
9 |
gaagcaaaggggaatggtggtaagaaattgggcaccacaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcg |
108 |
Q |
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|||| ||| |||||||||||| ||||||||||||||||||| ||| ||||| | || || || |||||||||||||||| || |||||||||||||| |
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| T |
11002656 |
gaaggaaaagggaatggtggtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcactgtggatggaactca |
11002755 |
T |
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| Q |
109 |
gtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaaggttgaacaaggtgattttggttgaggagatgaaggttg |
208 |
Q |
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| T |
11002756 |
gtgttggaagctatttgtgaaggagtgcctatgattgcatggcctttgtatgcagaacaaaggttgaacaaaatgattttggttgaggaaatgaaggtgg |
11002855 |
T |
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| Q |
209 |
ctttggaactgaatg |
223 |
Q |
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|||||||||| |||| |
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| T |
11002856 |
ctttggaactaaatg |
11002870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 11019046 - 11019199
Alignment:
| Q |
18 |
gggaatggtggtaagaaattgggcaccacaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgttggaa |
117 |
Q |
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||||||||| || ||||||||||| ||||||| ||||||||| | ||| |||| | |||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
11019046 |
gggaatggttgtgagaaattgggccccacaagttgcgatattgagtcataactccgtgggtggatttgtgactcattgtggatggaactccgtgttggaa |
11019145 |
T |
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| Q |
118 |
gctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaagg |
171 |
Q |
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||| | |||||||| ||||| ||| | |||||||| |||| | |||||||||| |
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| T |
11019146 |
gctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaagg |
11019199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 11079806 - 11079922
Alignment:
| Q |
18 |
gggaatggtggtaagaaattgggcaccacaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgttggaa |
117 |
Q |
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||||||||| || ||||| ||||||||||||||| | ||| ||| ||| ||| ||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
11079806 |
gggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagttggtgggttcgtgactcattgtggatggaactccgtgttggaa |
11079905 |
T |
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| Q |
118 |
gctgtatgtgaaggagt |
134 |
Q |
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||| | || |||||||| |
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| T |
11079906 |
gctatttgcgaaggagt |
11079922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 11050235 - 11050315
Alignment:
| Q |
91 |
cattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaagg |
171 |
Q |
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||||||||||||||||| |||||||||||| | | |||||| ||||| ||| | |||||||| |||| || |||||||||| |
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| T |
11050235 |
cattgtggatggaactccgtgttggaagctatttatgaaggggtgccaatgattgcatggcctttgtttgcagaacaaagg |
11050315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 4493290 - 4493253
Alignment:
| Q |
70 |
tcgattggtggattcgtgacacattgtggatggaactc |
107 |
Q |
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| T |
4493290 |
tcgattggtggattcttgactcattgtggatggaactc |
4493253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 23628149 - 23628117
Alignment:
| Q |
86 |
tgacacattgtggatggaactcggtgttggaag |
118 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
23628149 |
tgactcattgtggatggaactcggtgttggaag |
23628117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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