View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3664_low_12 (Length: 238)

Name: NF3664_low_12
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3664_low_12
NF3664_low_12
[»] chr7 (6 HSPs)
chr7 (17-238)||(19720410-19720631)
chr7 (44-175)||(34655543-34655674)
chr7 (51-183)||(43970035-43970167)
chr7 (51-189)||(513845-513983)
chr7 (131-190)||(41605441-41605499)
chr7 (51-99)||(41147747-41147795)
[»] chr2 (4 HSPs)
chr2 (44-196)||(648502-648654)
chr2 (44-192)||(4244365-4244513)
chr2 (119-196)||(3307834-3307911)
chr2 (51-99)||(10748043-10748091)
[»] chr1 (5 HSPs)
chr1 (44-205)||(51491702-51491863)
chr1 (44-175)||(28037631-28037762)
chr1 (51-190)||(33978131-33978270)
chr1 (75-190)||(12458735-12458850)
chr1 (134-190)||(317384-317440)
[»] chr5 (4 HSPs)
chr5 (44-175)||(10813109-10813240)
chr5 (103-196)||(12381539-12381632)
chr5 (53-99)||(28499171-28499217)
chr5 (51-99)||(23151262-23151310)
[»] chr3 (6 HSPs)
chr3 (44-175)||(52964114-52964245)
chr3 (44-175)||(54548291-54548422)
chr3 (44-97)||(16927334-16927387)
chr3 (119-189)||(39551441-39551511)
chr3 (115-184)||(13102181-13102250)
chr3 (52-157)||(40927359-40927464)
[»] chr4 (5 HSPs)
chr4 (44-205)||(5185413-5185575)
chr4 (75-190)||(53985821-53985936)
chr4 (109-178)||(54421370-54421439)
chr4 (51-99)||(32499539-32499587)
chr4 (51-99)||(42327942-42327990)
[»] scaffold0996 (1 HSPs)
scaffold0996 (51-191)||(1496-1636)
[»] chr6 (2 HSPs)
chr6 (51-190)||(16863234-16863373)
chr6 (51-99)||(10158994-10159042)
[»] chr8 (2 HSPs)
chr8 (51-99)||(9180770-9180818)
chr8 (51-99)||(11629493-11629541)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 19720410 - 19720631
Alignment:
Q  17 atttcacagtgcatagacatcttgaccacaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19720410 atttcacagtgcatagacatcttgaccacaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagttt 19720509  T
Q  117 ccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaaatttgtcttccctnnnnnnn 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  19720510 ccttatcacaacctagcccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaaatttgtcttccctaaaaaaa 19720609  T
Q  217 nggagttttgcaaacatctttt 238  Q
     |||||||||||||||||||||    
T  19720610 aggagttttgcaaacatctttt 19720631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 34655674 - 34655543
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||| |||| ||  |  |||| ||||| ||||||||| ||  ||| || |||  |||    
T  34655674 acaaataccgactttaaagtgtcgtatattaggaggcaagttaatagtgttgttcttagtataactagagcttccttatctcatactagcctccatcttt 34655575  T
Q  144 ttcatattgtaccatctactttgtactctttg 175  Q
    || ||| ||||||||| |||||||||||||||    
T  34655574 tttatagtgtaccatcaactttgtactctttg 34655543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 43970035 - 43970167
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatat 150  Q
    ||||||||| |||||||||| || | ||||||||||||| ||||||||| |  ||   |||||  ||||||||  | |||| |||||| |||||  ||      
T  43970035 ccgactttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatga 43970134  T
Q  151 tgtaccatctactttgtactctttgattatgaa 183  Q
    ||||||||||||||||||| |||||||||||||    
T  43970135 tgtaccatctactttgtaccctttgattatgaa 43970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 513845 - 513983
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatat 150  Q
    ||||||||  |||||| ||| || |||||||||| |||||||||||||| |  ||   ||||| ||||||||  || ||||||| ||| |||||| || |    
T  513845 ccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacctccatatttttaatgt 513944  T
Q  151 tgtaccatctactttgtactctttgattatgaattaaat 189  Q
    |||||| |||||||||||||| || |||| |||| ||||    
T  513945 tgtaccttctactttgtactccttaattacgaatgaaat 513983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 41605441 - 41605499
Alignment:
Q  131 aacccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatg 190  Q
    |||||||| |||||| ||| ||||||||||||||||||| | |||||||||||| |||||    
T  41605441 aacccccatattttttataatgtaccatctactttgtac-ccttgattatgaatgaaatg 41605499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 41147747 - 41147795
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  41147747 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctca 41147795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 648502 - 648654
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    |||||| ||||||||| |||||| ||||| ||||||||||||||||| || ||||| | ||||  ||||| ||| ||||||||||||| ||||||| |||    
T  648502 acaaatcccgactttagagtgtcgtatataaggaggcaagcaaatagagtggctcatagcatagctagagcttctttatcacaacctagcccccaccttt 648601  T
Q  144 ttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaa 196  Q
     | ||  ||||||||||||||||||||| |||||||||||| |||||||||||    
T  648602 attatcatgtaccatctactttgtactcattgattatgaatgaaatgaactaa 648654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 4244365 - 4244513
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    |||||| || ||||||| ||||||| ||||| ||||||||||||||| | |||||| |  |||  |||||  || ||||| || |||| | |  ||||||    
T  4244365 acaaattccaactttaaggtgtcatttattaagaggcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcctagctcttacattt 4244464  T
Q  144 ttcatattgtaccatctactttgtactctttgattatgaattaaatgaa 192  Q
    |  ||  |||||||||| |||||||||||||| |||||||| |||||||    
T  4244465 tcaattatgtaccatcttctttgtactctttgtttatgaatgaaatgaa 4244513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 3307834 - 3307911
Alignment:
Q  119 ttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaa 196  Q
    ||||||||||||| | |||| | |||||||  ||| ||| ||||||| || || |||||||||||| |||||||||||    
T  3307834 ttatcacaacctagcgcccataattttcatcatgtgccaactactttctattccttgattatgaatgaaatgaactaa 3307911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 10748043 - 10748091
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  10748043 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctca 10748091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 51491863 - 51491702
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |  ||||  |||| ||||||||| || |||||||||||  |||    
T  51491863 acaaataccgactttaaagtgtcatatattatgaggcaagctaatagggttgctcataatataaccagagcttccttatctcatcctaacccccatcttt 51491764  T
Q  144 ttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaaatttgtctt 205  Q
    || ||| ||||| ||| ||| ||||||||||| |  ||||| ||||| | ||| ||||||||    
T  51491763 tttatagtgtactatcaactctgtactctttgttcttgaatgaaatgcattaattttgtctt 51491702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 28037631 - 28037762
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |  |||  ||||| ||| ||||| || |||| ||||||  |||    
T  28037631 acaaataccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttt 28037730  T
Q  144 ttcatattgtaccatctactttgtactctttg 175  Q
    || ||| |||||| || | |||||||||||||    
T  28037731 tttatagtgtaccttcaaatttgtactctttg 28037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 33978270 - 33978131
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatat 150  Q
    ||||||||  |||||||||| || |||||||||| |||||||||||||| |  ||   ||||| ||||||||  || |||| |||||| |||||| || |    
T  33978270 ccgactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgt 33978171  T
Q  151 tgtaccatctactttgtactctttgattatgaattaaatg 190  Q
    |||||| |||||||||||||| || ||||||||| |||||    
T  33978170 tgtaccttctactttgtactccttaattatgaatgaaatg 33978131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 12458850 - 12458735
Alignment:
Q  75 ggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactcttt 174  Q
    ||||||||||||||||||| ||||||| ||||  |||||  ||||  || ||| ||| |||||| |||||  ||| ||||||   ||||||||| |||||    
T  12458850 ggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatattttctataatgtaccgcttactttgtattcttt 12458751  T
Q  175 gattatgaattaaatg 190  Q
    |||||||||| |||||    
T  12458750 gattatgaatgaaatg 12458735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 317440 - 317384
Alignment:
Q  134 ccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatg 190  Q
    ||||| |||| ||||  |||||||||||||||||||||||||||||| ||| |||||    
T  317440 ccccatatttgtcatgatgtaccatctactttgtactctttgattataaatgaaatg 317384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 10813240 - 10813109
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |  |||  ||||| ||||||||| || |||| ||||||  |||    
T  10813240 acaaataccgactttaaagtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttt 10813141  T
Q  144 ttcatattgtaccatctactttgtactctttg 175  Q
    || ||| |||||| || |||||||||||||||    
T  10813140 tttatagtgtaccttcaactttgtactctttg 10813109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 12381632 - 12381539
Alignment:
Q  103 cataattagagtttccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaatgaactaa 196  Q
    ||||| ||||| ||| ||||||||||||| || |||| ||| | ||  ||||||||| ||||||||||| |||| ||||||| |||||||||||    
T  12381632 cataactagagcttctttatcacaacctagcctccacctttattatcatgtaccatcgactttgtactccttgaatatgaatgaaatgaactaa 12381539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 28499171 - 28499217
Alignment:
Q  53 gactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||||||    
T  28499171 gactttacagtgtcgtatgttaggaggcaagcaaatagtgttgctca 28499217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 23151262 - 23151310
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  23151262 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctca 23151310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 52964245 - 52964114
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |  |||  ||||  ||||||||| || |||| ||||||  |||    
T  52964245 acaaataccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttt 52964146  T
Q  144 ttcatattgtaccatctactttgtactctttg 175  Q
    || ||| ||||||||| |||||||||||||||    
T  52964145 tttatagtgtaccatcaactttgtactctttg 52964114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 54548422 - 54548291
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    |||||| |||||||||||||||| ||||||||||||||||  ||||| |||||||| |  |||  ||||| ||||||||| || |||| ||||||  |||    
T  54548422 acaaatgccgactttaaagtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttt 54548323  T
Q  144 ttcatattgtaccatctactttgtactctttg 175  Q
    || ||| ||||||||| |||||||||||||||    
T  54548322 tttatagtgtaccatcaactttgtactctttg 54548291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 16927387 - 16927334
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgct 97  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  16927387 acaaataccgactttaaactgtcgtatattaggaggcaagctaatagggttgct 16927334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 39551441 - 39551511
Alignment:
Q  119 ttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgattatgaattaaat 189  Q
    |||||||| | ||||||| | || ||||||  | |||||||||||||||||| ||||||||||||| ||||    
T  39551441 ttatcacatcataacccctatatatttcatcatataccatctactttgtactatttgattatgaatgaaat 39551511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 13102250 - 13102181
Alignment:
Q  115 ttccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgattatgaat 184  Q
    ||||||||| || ||||||||||   ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  13102250 ttccttatcgcatcctaacccccctctttttaatattgtaccaactactttatactctttgctcatgaat 13102181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 40927464 - 40927359
Alignment:
Q  52 cgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatatt 151  Q
    |||||||  |||||| | |||| | ||||||||||||||||||||  | | ||||| |||||  |||||||  || |||| |||||| |||||| |||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttatgtcatcctatcccccatattttttatatt 40927365  T
Q  152 gtacca 157  Q
    ||||||    
T  40927364 gtacca 40927359  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5185575 - 5185413
Alignment:
Q  44 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacattt 143  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |  |||  ||||| ||||||||| || | || ||||||  |||    
T  5185575 acaaataccgactttaaagtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatcttagcccccatcttt 5185476  T
Q  144 ttcatattgtaccatctactttg-tactctttgattatgaattaaatgaactaaatttgtctt 205  Q
    || ||| |||||| || |||||| |||| |||| || ||||| ||||| | ||| ||||||||    
T  5185475 tttatagtgtaccttcaactttgttactttttgtttttgaatgaaatgcattaattttgtctt 5185413  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 53985936 - 53985821
Alignment:
Q  75 ggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactcttt 174  Q
    ||||||||||||||||||| ||||||| ||||  |||||  ||||  || ||| ||| |||||| |||||  ||| ||||||   ||||||| | |||||    
T  53985936 ggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatattttctataatgtaccgcttactttgcattcttt 53985837  T
Q  175 gattatgaattaaatg 190  Q
    |||||||||| |||||    
T  53985836 gattatgaatgaaatg 53985821  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 54421439 - 54421370
Alignment:
Q  109 tagagtttccttatcacaacctaacccccacatttttcatattgtaccatctactttgtactctttgatt 178  Q
    ||||| |||||||||||| |||| |||||| |||||  ||  |||| || ||||||||||||||||||||    
T  54421439 tagagcttccttatcacatcctagcccccatattttctatcatgtaacaactactttgtactctttgatt 54421370  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 32499539 - 32499587
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  32499539 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctca 32499587  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 42327990 - 42327942
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  42327990 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctca 42327942  T

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Target: scaffold0996 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 1636 - 1496
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatat 150  Q
    ||||||||  |||||| ||| || |||||||||| |||||||||||||| |  ||   ||||| ||||||||  || |||| |||||| |||||| || |    
T  1636 ccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgt 1537  T
Q  151 tgtaccatctactttgtactctttgattatgaattaaatga 191  Q
    |||||| |||||||||||||| || ||||||||| ||||||    
T  1536 tgtaccttctactttgtactccttaattatgaatgaaatga 1496  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 16863234 - 16863373
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctaacccccacatttttcatat 150  Q
    ||||||||  |||||| ||| || ||||||||||||||||||| ||||||| ||||  |||||  ||||  || ||| ||| |||||| |||||  |||     
T  16863234 ccgactttgtagtgtcgtatgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatattttctataa 16863333  T
Q  151 tgtaccatctactttgtactctttgattatgaattaaatg 190  Q
    ||||||   ||||||||| ||||||||||||||| |||||    
T  16863334 tgtaccgcttactttgtattctttgattatgaatgaaatg 16863373  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 10159042 - 10158994
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  10159042 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctca 10158994  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 9180818 - 9180770
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  9180818 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctca 9180770  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 11629493 - 11629541
Alignment:
Q  51 ccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctca 99  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||    
T  11629493 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctca 11629541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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