View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3664_low_13 (Length: 227)
Name: NF3664_low_13
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3664_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 34515984 - 34516184
Alignment:
| Q |
13 |
gcataggtgacgattaatattttgtaatgtaattagtgtactaaatttcttctcctaatgtatagtgcaaatgtaatgagtaa-ttatttttgtggtgta |
111 |
Q |
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| T |
34515984 |
gcataggtgacgattaatattttgtaatgtaattagtgtactaaatttcttctcctaatgtatagtgcaaatgtaatgagtaaattatttttgtggtgta |
34516083 |
T |
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| Q |
112 |
ggttcaatggagaggatttcttgaataggtggaagggtaaaaagataatgtttgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtat |
211 |
Q |
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| T |
34516084 |
ggttcaatggagaggatttcttgaataggtggaagggtaaaaagataatgtttgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtat |
34516183 |
T |
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| Q |
212 |
g |
212 |
Q |
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| T |
34516184 |
g |
34516184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 34505869 - 34506054
Alignment:
| Q |
31 |
attttgtaatgtaattagtgtactaaatttcttctcctaatgtat-agtgcaaatgtaatgagtaattatttttgtggtgtag---gttcaatggagagg |
126 |
Q |
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| T |
34505869 |
attttgtaatataattagtgtacttaatatcttctcataatgtattagtacaaatgtaatgagtaattatttttgtggtgtagcaggttcaatggagagg |
34505968 |
T |
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| Q |
127 |
atttcttgaataggtggaagggtaaaaagataatgtttgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatg |
212 |
Q |
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| T |
34505969 |
atttcttgaataggtggaaggataagaagataatgtttgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatg |
34506054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 4690130 - 4690059
Alignment:
| Q |
141 |
tggaagggtaaaaagataatgtttgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatg |
212 |
Q |
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|||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||| |
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| T |
4690130 |
tggaggggtaagaagataatgtttgtgggtgattcactgagtctgaacatgtgggaatcactgtcgtgtatg |
4690059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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