View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3664_low_3 (Length: 409)

Name: NF3664_low_3
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3664_low_3
NF3664_low_3
[»] chr3 (3 HSPs)
chr3 (27-397)||(26830788-26831158)
chr3 (181-346)||(9724852-9725017)
chr3 (189-336)||(3110746-3110893)
[»] chr7 (4 HSPs)
chr7 (189-355)||(42162474-42162640)
chr7 (50-155)||(5997958-5998063)
chr7 (189-346)||(25498829-25498986)
chr7 (189-338)||(32148251-32148400)
[»] chr5 (1 HSPs)
chr5 (189-336)||(30957835-30957982)
[»] chr4 (1 HSPs)
chr4 (189-336)||(53981869-53982016)
[»] chr2 (3 HSPs)
chr2 (189-336)||(14898557-14898704)
chr2 (189-336)||(43776766-43776913)
chr2 (120-205)||(34574032-34574116)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 27 - 397
Target Start/End: Original strand, 26830788 - 26831158
Alignment:
Q  27 aaggagactcttacaagaagtcaatgtgaagatgatatctcaaacaatagtaattttgaatagagtataataaaggagatagagcacatcttcctacaaa 126  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26830788 aaggagactcttacaagaaatcaatgtgaagatgatatctcaaacaatagtaattttgagtagagtataataaaggagatagagcacatcttcctacaaa 26830887  T
Q  127 gtcattgccacataaaacttttgagtaactagtacagaagattcattgatatttttcatctaatatataattatctttataagaaggagagataaatgtg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26830888 gtcattgccacataaaacttttgagtaactagtacagaagattcgttgacatttttcatctaatatataattatctttataagagggagagataaatgtg 26830987  T
Q  227 ttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaattttttaacgaaggatattatcacacaaaaagattatgtactct 326  Q
    ||||||  | ||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26830988 ttctacacttattttcccttaaccatagttttatctcattaaatttttttagtaaaatttttaacgaaggatattatcacacaaaaagattatgtactct 26831087  T
Q  327 ttttctttcattaaaattttgtttccacttgatgnnnnnnnattaaggttctaatgaatattatgaatatt 397  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  26831088 ttttctttcattaaaattttgtttccacttgatgtttttttattaaggttctaatgaatattatgaatatt 26831158  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 346
Target Start/End: Complemental strand, 9725017 - 9724852
Alignment:
Q  181 ttcatctaatatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagta 280  Q
    ||||||| |||||||||| ||||||| ||  ||||| | | ||||||||| |  || |||||||||| |||| |||||||| ||||    ||| || |||    
T  9725017 ttcatctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccatttggttttcctggta 9724918  T
Q  281 aattttttaacgaaggatattatcacacaaaaagattatgtactctttttctttcattaaaatttt 346  Q
    |  |||||||||| | | ||||| |||||||| |||  ||||||||||||| |||| || ||||||    
T  9724917 aggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactagaatttt 9724852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 3110893 - 3110746
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | | ||||||||| |  || |||||||||| |||| |||||||| ||||    |||||| ||||  |||||    
T  3110893 atatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggttttt 3110794  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttca 336  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||    
T  3110793 aacgaggcagattataacacaaaaggatgttgtactctttttccttca 3110746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 355
Target Start/End: Complemental strand, 42162640 - 42162474
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | ||||||||||| |  || |||||||||| |||| |||||||| ||||    |||||| ||||  |||||    
T  42162640 atatataattgtctttatgagggggagacaaaaatgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggttttt 42162541  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttcattaaaattttgtttccact 355  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| |||| | ||||||| || |||||    
T  42162540 aacgaggcagattataacacaaaaggatgttgtactctttttccttcactgaaatttttttcccact 42162474  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 5997958 - 5998063
Alignment:
Q  50 atgtgaagatgatatctcaaacaatagtaattttgaatagagtataataaaggagatagagcacatcttcctacaaagtcattgccacataaaacttttg 149  Q
    |||||||||| ||||||| |||| || |||||| ||  |||||||||||| |||||||||  |  |||| |||||||||||   |||  |||||||||||    
T  5997958 atgtgaagataatatctctaacactaataatttagagaagagtataataacggagatagactaggtctttctacaaagtcaccaccaagtaaaacttttg 5998057  T
Q  150 agtaac 155  Q
    ||||||    
T  5998058 agtaac 5998063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 346
Target Start/End: Original strand, 25498829 - 25498986
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | ||||||||||| |  || |||||||||| |||| |||||||| ||||    ||| || ||||  |||||    
T  25498829 atatataattgtctttatgagggggagacaaaaatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggttttt 25498928  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttcattaaaatttt 346  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| |||| || ||||||    
T  25498929 aacgaggcagattataacacaaaaggatgctgtactctttttccttcactagaatttt 25498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 32148251 - 32148400
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | | ||||||||| |  || |||||||||| |||| |||||||| ||||    ||| || ||||  |||||    
T  32148251 atatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggttttt 32148350  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttcatt 338  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||||    
T  32148351 aacgaggcagattataacacaaaaggatgttgtactctttttccttcatt 32148400  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 30957982 - 30957835
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | | |||||||||||  || |||||||||| |||| |||||||| ||||    ||| || ||||  |||||    
T  30957982 atatataattgtctttatgagggggagacaaagatgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaaggttttt 30957883  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttca 336  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||    
T  30957882 aacgaggcagattataacacaaaaggatgttgtactctttttccttca 30957835  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 53981869 - 53982016
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | ||||||||||| |  || |||||||||| |||| |||||||| ||||    ||| || ||||  |||||    
T  53981869 atatataattgtctttatgagggggagacaaaaatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggttttt 53981968  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttca 336  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||    
T  53981969 aacgaggcagattataacacaaaaggatgttgtactctttttccttca 53982016  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 14898557 - 14898704
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | | |||||||||||  || |||||||||| |||| |||||||| ||||    ||| || ||||  |||||    
T  14898557 atatataattgtctttatgagggggagacaaagatgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaaggttttt 14898656  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttca 336  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||    
T  14898657 aacgaggcagattataacacaaaaggatgttgtactctttttccttca 14898704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 43776766 - 43776913
Alignment:
Q  189 atatataattatctttataagaaggagagataaatgtgttctacgatcattttcccttagccatagttttatctcattaaaattttctagtaaatttttt 288  Q
    |||||||||| ||||||| ||  ||||| | | ||||||||| |  || |||||||||| |||| |||||||| ||||    ||| || ||||| |||||    
T  43776766 atatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaagttttt 43776865  T
Q  289 aacgaaggatattatcacacaaaaagattatgtactctttttctttca 336  Q
    ||||| | | ||||| |||||||| |||  ||||||||||||| ||||    
T  43776866 aacgaggcagattataacacaaaaggatattgtactctttttccttca 43776913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 34574116 - 34574032
Alignment:
Q  120 ctacaaagtcattgccacataaaacttttgagtaactagtacagaagattcattgatatttttcatctaatatataattatcttta 205  Q
    |||||||||||| ||||  ||||  ||||||||||||| |||| |||||| ||||| ||| |||||||  ||||||||| ||||||    
T  34574116 ctacaaagtcatcgccaagtaaagtttttgagtaacta-tacaaaagattaattgacattcttcatctcgtatataattgtcttta 34574032  T

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