View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3664_low_6 (Length: 281)

Name: NF3664_low_6
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3664_low_6
NF3664_low_6
[»] chr5 (10 HSPs)
chr5 (16-276)||(22865674-22865940)
chr5 (26-264)||(25537330-25537574)
chr5 (24-269)||(25828908-25829159)
chr5 (16-140)||(24546391-24546521)
chr5 (89-166)||(24647311-24647388)
chr5 (135-226)||(8938873-8938966)
chr5 (135-224)||(16621173-16621262)
chr5 (200-268)||(31202530-31202598)
chr5 (111-226)||(22903056-22903171)
chr5 (178-226)||(4477161-4477209)
[»] chr7 (11 HSPs)
chr7 (16-267)||(16987004-16987261)
chr7 (16-267)||(13292035-13292292)
chr7 (104-263)||(34854169-34854328)
chr7 (16-216)||(9135273-9135479)
chr7 (136-265)||(9867977-9868106)
chr7 (111-220)||(39879356-39879465)
chr7 (111-251)||(5863125-5863265)
chr7 (135-221)||(12644753-12644839)
chr7 (92-209)||(18773961-18774078)
chr7 (111-231)||(10287609-10287729)
chr7 (101-165)||(5929014-5929078)
[»] scaffold0002 (2 HSPs)
scaffold0002 (16-269)||(379636-379895)
scaffold0002 (89-170)||(121002-121083)
[»] chr4 (10 HSPs)
chr4 (26-262)||(15742075-15742317)
chr4 (89-215)||(15514552-15514678)
chr4 (46-224)||(5518505-5518689)
chr4 (89-221)||(12683753-12683885)
chr4 (30-166)||(14601941-14602083)
chr4 (20-275)||(16012388-16012647)
chr4 (111-224)||(47253242-47253355)
chr4 (26-81)||(23350600-23350655)
chr4 (178-220)||(3981919-3981961)
chr4 (101-157)||(13896482-13896538)
[»] chr2 (15 HSPs)
chr2 (16-275)||(15390497-15390762)
chr2 (14-222)||(19050345-19050559)
chr2 (16-270)||(15825074-15825333)
chr2 (102-261)||(18135799-18135958)
chr2 (24-267)||(10923085-10923334)
chr2 (111-265)||(29137825-29137979)
chr2 (30-223)||(29710984-29711181)
chr2 (30-205)||(24157232-24157413)
chr2 (135-224)||(45714960-45715049)
chr2 (135-275)||(20120261-20120401)
chr2 (138-228)||(45258192-45258282)
chr2 (89-166)||(24499812-24499889)
chr2 (16-78)||(30638654-30638716)
chr2 (191-228)||(19919159-19919196)
chr2 (23-87)||(20120455-20120519)
[»] chr6 (19 HSPs)
chr6 (16-267)||(34064117-34064374)
chr6 (16-275)||(31295447-31295712)
chr6 (23-264)||(12449502-12449749)
chr6 (30-165)||(27860874-27861015)
chr6 (89-266)||(19730582-19730758)
chr6 (89-261)||(9403105-9403272)
chr6 (89-223)||(22497289-22497423)
chr6 (18-157)||(19276991-19277135)
chr6 (31-206)||(12424241-12424422)
chr6 (104-226)||(16343542-16343664)
chr6 (191-226)||(22692066-22692101)
chr6 (111-217)||(20148289-20148393)
chr6 (111-217)||(22184435-22184539)
chr6 (89-168)||(23768214-23768293)
chr6 (111-168)||(689870-689927)
chr6 (136-217)||(9277338-9277419)
chr6 (191-276)||(19277175-19277260)
chr6 (111-207)||(14080466-14080561)
chr6 (76-165)||(34187323-34187413)
[»] scaffold0380 (1 HSPs)
scaffold0380 (16-258)||(6772-7020)
[»] chr3 (16 HSPs)
chr3 (16-264)||(12516110-12516364)
chr3 (16-230)||(14860011-14860231)
chr3 (16-275)||(431228-431493)
chr3 (16-265)||(25495863-25496117)
chr3 (16-267)||(12731473-12731730)
chr3 (18-221)||(12108387-12108596)
chr3 (111-226)||(28723787-28723902)
chr3 (106-223)||(12251954-12252071)
chr3 (178-226)||(21649376-21649424)
chr3 (111-216)||(21342300-21342405)
chr3 (110-166)||(1770848-1770904)
chr3 (26-82)||(17485548-17485604)
chr3 (191-275)||(21652557-21652641)
chr3 (106-157)||(9781514-9781565)
chr3 (111-166)||(17143762-17143817)
chr3 (26-70)||(12256952-12256996)
[»] scaffold0205 (2 HSPs)
scaffold0205 (14-275)||(22800-23067)
scaffold0205 (92-275)||(10909-11092)
[»] chr1 (13 HSPs)
chr1 (16-221)||(23728732-23728942)
chr1 (16-264)||(16299495-16299739)
chr1 (16-276)||(4601399-4601665)
chr1 (18-266)||(52565502-52565755)
chr1 (119-276)||(14255051-14255208)
chr1 (111-226)||(22414738-22414853)
chr1 (89-219)||(25408066-25408196)
chr1 (30-275)||(21682516-21682767)
chr1 (144-228)||(48637511-48637596)
chr1 (111-166)||(5671793-5671848)
chr1 (111-226)||(16030358-16030473)
chr1 (178-226)||(5459788-5459836)
chr1 (111-211)||(12177364-12177464)
[»] chr8 (14 HSPs)
chr8 (14-223)||(24576493-24576708)
chr8 (32-270)||(21416657-21416901)
chr8 (136-223)||(17319657-17319747)
chr8 (111-217)||(18322915-18323021)
chr8 (135-276)||(3459521-3459661)
chr8 (89-164)||(4565384-4565459)
chr8 (16-154)||(11776155-11776299)
chr8 (178-275)||(20055493-20055590)
chr8 (178-226)||(15057998-15058046)
chr8 (16-72)||(24070950-24071006)
chr8 (111-165)||(6928103-6928157)
chr8 (192-226)||(23269209-23269243)
chr8 (135-228)||(13764950-13765043)
chr8 (89-154)||(23243819-23243884)
[»] scaffold0005 (1 HSPs)
scaffold0005 (30-166)||(215295-215437)
[»] scaffold0074 (1 HSPs)
scaffold0074 (135-257)||(35185-35307)
[»] scaffold0479 (1 HSPs)
scaffold0479 (191-276)||(4953-5038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (27-166)||(165-311)
[»] scaffold0103 (1 HSPs)
scaffold0103 (32-220)||(40765-40959)
[»] scaffold0023 (1 HSPs)
scaffold0023 (111-212)||(95823-95924)
[»] scaffold0505 (1 HSPs)
scaffold0505 (111-226)||(7848-7963)
[»] scaffold0140 (1 HSPs)
scaffold0140 (89-260)||(6227-6398)
[»] scaffold0263 (1 HSPs)
scaffold0263 (101-219)||(20500-20618)
[»] scaffold0057 (1 HSPs)
scaffold0057 (113-259)||(73817-73963)
[»] scaffold0464 (1 HSPs)
scaffold0464 (16-155)||(11550-11691)
[»] scaffold0259 (1 HSPs)
scaffold0259 (208-258)||(24400-24450)
[»] scaffold0092 (1 HSPs)
scaffold0092 (89-165)||(21609-21685)
[»] scaffold0054 (1 HSPs)
scaffold0054 (111-166)||(68815-68868)
[»] scaffold0291 (1 HSPs)
scaffold0291 (31-223)||(8508-8701)
[»] scaffold0174 (1 HSPs)
scaffold0174 (190-220)||(29368-29398)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 22865940 - 22865674
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||| ||||||||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||||||||| ||||||      |||||| || |||||||||    
T  22865940 tgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctcaaggtacac 22865841  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||| |||||| |  ||||| ||||| ||||||||||||||||| ||    
T  22865840 atcacttttcacaacatttcttacacactttttctcagttccattactaacttgagcgtcaaagtgctaacgtacctgcatgcacctttcgttccactgc 22865741  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    ||||||   |||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||    
T  22865740 gaagacatgtcgccaccgtgccgaaagccgttaccgtcacaccggagcattctctgccgccgttgct 22865674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 25537574 - 25537330
Alignment:
Q  26 cgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttc 119  Q
    |||||||||||||| | | ||||||| ||||||| || |||||||  | ||||||||| ||||||      |||||| || |||||| ||||||||||||    
T  25537574 cgtccctaatcacacgtcacataacctggagacggttttggccaaggcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttc 25537475  T
Q  120 acaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcat 219  Q
    |||||| ||| ||  || ||||||||||||||||||| | ||||||| |   || |  ||||||| |||  ||||||||||||||||||||||||||| |    
T  25537474 acaacacttcatacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactctt 25537375  T
Q  220 cgccaccatgccgaaagccgttaccatcacaccggagcattctct 264  Q
    |||| || ||||  || |||||||| ||||||| |||||||||||    
T  25537374 cgccgccgtgccagaaaccgttaccgtcacaccagagcattctct 25537330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 25828908 - 25829159
Alignment:
Q  24 tccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttcactcttaaggtacacatcacttt 117  Q
    |||| ||||||||||| |||||||||||||||||||  |||||||||||| |   |||||  |||||       ||||| || |||| ||||||||||||    
T  25828908 tccgcccctaatcacacgccgcataacccggagacggctatggccaacacgcttttatatacgggtgaacttgtttcaccctcaagggacacatcacttt 25829007  T
Q  118 tcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactc 217  Q
    |||||| | ||||||  |||| ||||||| |||||||| | ||| |||| ||| |  |  ||||||||||  | ||| ||| |||| ||||||||||||     
T  25829008 tcacaatacttcttacacactttttctcaattccattattgactagagcgtcagattgctaacgtgcctgaatacacattttgttcaaccgcgaagactt 25829107  T
Q  218 atcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccac 269  Q
    ||||||||| |||||||||  |||||| |||| |  ||| ||||||||||||    
T  25829108 atcgccaccgtgccgaaagtagttaccgtcaccctagagtattctctgccac 25829159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 24546521 - 24546391
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg-------tgcttcactcttaaggtaca 108  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||| | ||||||||| ||||       ||||||||  | ||||||||    
T  24546521 tgtcttgctccgtccctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtaca 24546422  T
Q  109 catcacttttcacaacatttcttatgcactct 140  Q
    |||||| |||||||||| ||||||| ||||||    
T  24546421 catcac-tttcacaacacttcttatacactct 24546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 24647388 - 24647311
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||  |||||||| |||||||||||||| | ||||||    
T  24647388 tgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgagc 24647311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 8938966 - 8938873
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccg--cgaagactcatcgccacc 226  Q
    |||||||||||||||||| |||| ||| ||||||   || || ||||||||||| |||||||||||||| ||||  | ||||||||||||||||    
T  8938966 cactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccacc 8938873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 16621262 - 16621173
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 224  Q
    |||||||||||||||||| || |  ||||||| |  ||| || ||||||||| | | ||||||||||||||||| |||||||||||||||    
T  16621262 cactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcgcca 16621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 31202530 - 31202598
Alignment:
Q  200 gttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcca 268  Q
    |||||||||||||||||||||||| || || |  ||| ||||||| ||||||| |||||||||||||||    
T  31202530 gttccaccgcgaagactcatcgccgccgtgtcagaagtcgttaccgtcacaccagagcattctctgcca 31202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 22903171 - 22903056
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||| |  ||| |  ||| ||||| |    ||||||||||||||||||    
T  22903171 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccgcg 22903072  T
Q  211 aagactcatcgccacc 226  Q
    || ||||||| |||||    
T  22903071 aaaactcatcaccacc 22903056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 4477209 - 4477161
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 226  Q
    |||||||||||  ||||| ||||| ||||||| ||||||||||||||||    
T  4477209 aacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccacc 4477161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 16987004 - 16987261
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    ||||||||||| ||||||||||||  |||||||| ||||||||| ||||||||||| | ||||||||| ||||||      ||||||  |||||| ||||    
T  16987004 tgtcctgctccatccctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcacctttaagggacac 16987103  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  |||||||||||| ||||||||||  ||||||  ||| || |  |||||||| || ||||||||||||||||||||    
T  16987104 atcacttttcacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgc 16987203  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 267  Q
    |||||||||| ||| || | ||  ||||||||| | ||||||||||||||||||||||    
T  16987204 gaagactcattgccgccgtaccagaagccgttagcgtcacaccggagcattctctgcc 16987261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 13292035 - 13292292
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||| | ||||      |||||| || |||||||||    
T  13292035 tgtcatgctccgtccctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacac 13292134  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  |||||||| |||||| ||||||| |||||||| | | || |  ||||| |||||   |||||||| ||||||| |    
T  13292135 atcacttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccac 13292234  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 267  Q
    |||||||||||||| || ||||| || | |||||| ||||| ||||||||||||||||    
T  13292235 gaagactcatcgccgccgtgccggaaactgttaccgtcacatcggagcattctctgcc 13292292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 34854328 - 34854169
Alignment:
Q  104 gtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttc 203  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||| || |  |||||| ||||   |||| |||||||    
T  34854328 gtacacatcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttc 34854229  T
Q  204 caccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctc 263  Q
    |||| |||| | ||||| |  |||| | |||||  |||||| ||||| ||||||||||||    
T  34854228 caccacgaacattcatcactgccatacggaaagttgttaccgtcacatcggagcattctc 34854169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 9135273 - 9135479
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| ||||||||||||||||| ||  ||||||||||||||| ||||| |||| ||  | |||||| ||||||      |||||| || ||||||       
T  9135273 tgtcctcctccgtccctaatcacacgctacataacccggagacggttatgaccaatacgtgtctatataagggtgaatttgcttcaccctcaaggtatga 9135372  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
     ||||||||||||||| || |||  |||||||||||| |||||||||| |||||||| | | || |  |||||||||   |||||||||||||||||||     
T  9135373 ttcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccgt 9135472  T
Q  210 gaagact 216  Q
    |||||||    
T  9135473 gaagact 9135479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 265
Target Start/End: Original strand, 9867977 - 9868106
Alignment:
Q  136 actctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaa 235  Q
    |||||| ||||||||||||||| |||||||| ||| || |  ||||| ||||| |||||||||||| ||||||||||||||| ||||| || | | | ||    
T  9867977 actcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcccaccgcgaagactcgtcgccgccgttctggaa 9868076  T
Q  236 gccgttaccatcacaccggagcattctctg 265  Q
    ||||||||| ||||| || |||||| ||||    
T  9868077 gccgttaccgtcacatcgaagcattatctg 9868106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 39879465 - 39879356
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    |||||||| |||||| || |||  ||||||||||||||| ||||||| |||||||| | |||| || |||||| ||||  ||||||||||||||||| ||    
T  39879465 tcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacg 39879366  T
Q  211 aagactcatc 220  Q
    |||| |||||    
T  39879365 aagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 5863265 - 5863125
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    |||||||| |||||||||  ||  |||||||||||||||| |||||| |||||||| |   || |  ||||||| |||  |||  |||||||| |||| |    
T  5863265 tcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccgtg 5863166  T
Q  211 aagactcatcgccaccatgccgaaagccgttaccatcacac 251  Q
    |||||||||||| ||| | |||||| |||||||||||||||    
T  5863165 aagactcatcgctaccgtaccgaaaaccgttaccatcacac 5863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 12644839 - 12644753
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcg 221  Q
    |||| |||||||||||||||||| || ||||| ||  || |  ||| ||||||| ||||||||||||||||||| ||||||||||||    
T  12644839 cactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcg 12644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 18774078 - 18773961
Alignment:
Q  92 ttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttg 191  Q
    ||||| || |||||||||| |||||||||| ||| |||||   |  ||| |||||||||||||||| | |||| | || ||| |  ||||||||||| ||    
T  18774078 ttcaccctcaaggtacacaacacttttcactacacttctttgactttctctctcagttccattactgatttgatcgtcgaagtgctaacgtgcctgcatg 18773979  T
Q  192 cacctttcgttccaccgc 209  Q
    ||||||||||||||||||    
T  18773978 cacctttcgttccaccgc 18773961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 10287609 - 10287729
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||||||  |||| |||||||| ||||||||| |||||||| | || | |  |||||||||||  | |||||| ||||||||| |    
T  10287609 tcacttttcacaacacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccaccgtg 10287708  T
Q  211 aagactcatcgccaccatgcc 231  Q
     ||| || |||||||| ||||    
T  10287709 tagattcgtcgccaccttgcc 10287729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 5929014 - 5929078
Alignment:
Q  101 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 165  Q
    |||| |||||||||||||||||||| ||||||  | |||| | |||||||||||||| |||||||    
T  5929014 aagggacacatcacttttcacaacacttcttacactctctctttcagttccattactgacttgag 5929078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 379895 - 379636
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    ||||||||||||||| |||||||| |||||||||  | |||| | ||||| ||||||  |||||||||  |||||      |||||| || |||||||||    
T  379895 tgtcctgctccgtccataatcacacgccgcataattcagagatggttatgaccaacatgcgcctatatacgggtgaacttgcttcaccctcaaggtacac 379796  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||| |||| ||  |||||| |  |||||||||   ||||||||||||||||||||    
T  379795 atcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgc 379696  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccac 269  Q
    |||||||||||| | || | ||| |||| |||||  ||||||||||||||||||||||||    
T  379695 gaagactcatcgtcgccgtaccggaagctgttacagtcacaccggagcattctctgccac 379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 121002 - 121083
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatca 170  Q
    |||||||| || ||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||| |||||||    
T  121002 tgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaagcatca 121083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 262
Target Start/End: Original strand, 15742075 - 15742317
Alignment:
Q  26 cgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttc 119  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||      ||||| ||| |||||||||||||||||||    
T  15742075 cgtccttaatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttc 15742174  T
Q  120 acaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcat 219  Q
    |||||| ||||||  |||| |||||||||||||||||| |||||||| | | || |  |||||||| ||  |||||||||| |||||| |||||||||||    
T  15742175 acaacacttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcat 15742274  T
Q  220 cgccaccatgccgaaagccgttaccatcacaccggagcattct 262  Q
    || | || || |  || |||||||| |||||||||||||||||    
T  15742275 cgtcgccgtgtcagaaaccgttaccgtcacaccggagcattct 15742317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 15514552 - 15514678
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || ||||||||||||||||| ||||||| ||||||  |||||||| |||||||||||||| |||||||| |   || |  ||||||||| |    
T  15514552 tgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctac 15514651  T
Q  189 ttgcacctttcgttccaccgcgaagac 215  Q
      ||||| |||||||||||||||||||    
T  15514652 aggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 5518689 - 5518505
Alignment:
Q  46 ataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactc 139  Q
    |||||||||||||| ||||| ||||||| ||||||||| ||||||      |||||| || ||||||| ||||||||| ||||||| ||||||  || ||    
T  5518689 ataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattc 5518590  T
Q  140 tttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 224  Q
    | ||||||||| |||||| |||||||| |  ||| |  |||||| ||||   ||||||||||||||  ||||||||| |||||||    
T  5518589 tctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagacttatcgcca 5518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 12683885 - 12683753
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| |||||||||    ||||||||||||||| ||  ||  ||||||||||||||| |||||||||||||||| |   || |  |||||||||||    
T  12683885 tgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgc 12683786  T
Q  189 ttgcacctttcgttccaccgcgaagactcatcg 221  Q
      ||||||||||||||||||| |||||||||||    
T  12683785 aggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 14601941 - 14602083
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 123  Q
    |||||||||| ||||||||||||||||||  |||||  ||||||||| |||||| ||| ||      |||||| || |||||||||| ||||||||||||    
T  14601941 cctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaa 14602040  T
Q  124 catttcttatgcactctttctcagttccattactaacttgagc 166  Q
    || ||||||  |||||| | |||||| ||||||| ||||||||    
T  14602041 cacttcttacacactctctttcagtttcattactgacttgagc 14602083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 16012388 - 16012647
Alignment:
Q  20 ctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatca 113  Q
    |||||||||| ||||||||| |||||||||| |||| ||||||||  ||||| | ||||||||| ||||||      |||||| || ||| |||| ||||    
T  16012388 ctgctccgtcactaatcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttcac-ctcaagatacatatca 16012486  T
Q  114 cttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaag 213  Q
    ||| ||||||   ||||||  |||||| |||||||||||||||| |||||||| ||  || || |||||||||||  | ||| ||||| || ||| ||||    
T  16012487 cttctcacaatgcttcttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgcaggtaccattcgtccctccgtgaag 16012586  T
Q  214 actcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    ||  |||    |  ||||  ||||||||||||||||||| | ||||||||||||||| ||||    
T  16012587 acggatcttgtcg-tgcccgaagccgttaccatcacaccagtgcattctctgccaccgttgc 16012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 47253355 - 47253242
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| || |||  ||||||||||||||||||||||| |||||||| |   || |  ||| |||||||  |||||||| || ||||| ||    
T  47253355 tcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgtcccaccccg 47253256  T
Q  211 aagactcatcgcca 224  Q
    ||||||| ||||||    
T  47253255 aagactcgtcgcca 47253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 23350600 - 23350655
Alignment:
Q  26 cgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctat 81  Q
    |||||||||||||| ||| ||||||||||||||| ||||| ||||||| |||||||    
T  23350600 cgtccctaatcacacgccacataacccggagacggttatgaccaacacgcgcctat 23350655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 3981961 - 3981919
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatc 220  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||    
T  3981961 aacgtgcatgcatgcacctttcgttccaccgtgaagactcatc 3981919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 13896482 - 13896538
Alignment:
Q  101 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattact 157  Q
    ||||||||||||||||| ||||||| ||||||| || ||| | |||||||| |||||    
T  13896482 aaggtacacatcactttccacaacacttcttatacaatctctttcagttcccttact 13896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 15390497 - 15390762
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    ||||||||||||||||||||||||   |||||||||||| |||| |||||||| || | ||||||||| ||||||      |||||| || |||||||||    
T  15390497 tgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcaccctcaaggtacac 15390596  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  |||| ||| | |||||||| ||| |||||||| |||||| |  ||||||||     ||| ||||||||||| |||    
T  15390597 atcacttttcacaacacttcttacacactgtttattagttccatcacttacttgagcgtcaaagtgctaacgtgccaataggcagctttcgttccatcgc 15390696  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||||||||||||  || ||||| ||||||||||| ||||||  |||||||||||| |||| ||||    
T  15390697 gaagactcatcgctgccgtgccggaagccgttaccgtcacactagagcattctctggcaccgttgc 15390762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 19050345 - 19050559
Alignment:
Q  14 catgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtac 107  Q
    ||||||||||||| | |||||||| | ||||||||||||||||    ||||||||||| || |||||||| ||||||      ||||||||| | |||||    
T  19050345 catgtcctgctccatgcctaatcatacgccgcataacccggagttagttatggccaacgcaagcctatataagggtgaacttacttcactctcagggtac 19050444  T
Q  108 acatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccacc 207  Q
    |||||||||||||||||| ||||||  | |||||||| ||||| |||||| |||||||| ||| || |  |||| | ||||    |||||||||||||||    
T  19050445 acatcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgttccacc 19050544  T
Q  208 gcgaagactcatcgc 222  Q
    ||||| |||||||||    
T  19050545 gcgaacactcatcgc 19050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 15825333 - 15825074
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| |||||||| ||| |||| |||||||||| || ||||| ||||| ||||| | ||||||||  ||||||      |||||| || |||||||||    
T  15825333 tgtcctactccgtccttaaacacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacac 15825234  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    || ||||||||||||| ||  ||  ||||||||||||||||||||||  |||||||| |||||| |  |||||||||||   ||| |||||||||||| |    
T  15825233 atgacttttcacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccaccac 15825134  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacc 270  Q
     ||||||| |  || || |||||  |||| ||| | |||||||||| ||||||||||||||    
T  15825133 aaagactc-ttaccgccgtgccggtagccattatcgtcacaccggaacattctctgccacc 15825074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 261
Target Start/End: Complemental strand, 18135958 - 18135799
Alignment:
Q  102 aggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgt 201  Q
    ||||| ||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||| ||| ||    ||||||||| |  ||||||||| |    
T  18135958 aggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcacctttcat 18135859  T
Q  202 tccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattc 261  Q
     |||||| ||||||||| |||| ||   |||||||  |||||||||||||||||| ||||    
T  18135858 cccaccgtgaagactcaacgccgccgcaccgaaagtggttaccatcacaccggagaattc 18135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 10923085 - 10923334
Alignment:
Q  24 tccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttt 117  Q
    |||||| ||||||||| ||||||||| ||| ||||  ||||| ||||||||||  ||||| ||||||      |||||| || |||| |||| |||||||    
T  10923085 tccgtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtgtatataagggtgaacttgcttcaccctcaaggcacacttcacttt 10923184  T
Q  118 tcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactc 217  Q
    ||||| || ||  ||  |||||||| | |||||||| ||| |||||||  ||  || |  ||||||||| | | |||||||||||||||||||||||||     
T  10923185 tcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgttccaccgcgaagacta 10923284  T
Q  218 atcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 267  Q
    ||| ||||| | ||| |  || ||||| ||||||| ||||||||||||||    
T  10923285 atcaccaccgttccggagaccattaccgtcacaccagagcattctctgcc 10923334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 29137979 - 29137825
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||| ||||||||||||||  ||||||||||||||| ||||| | |||||||| ||   | |  ||||| |||||   || ||||||||||||| ||    
T  29137979 tcactttccacaacatttcttacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacctcg 29137880  T
Q  211 aagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctg 265  Q
    | ||||||||| | || ||||| |||||||||||||||||||  | |||||||||    
T  29137879 atgactcatcgtcgccgtgccggaagccgttaccatcacaccaaaacattctctg 29137825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 29711181 - 29710984
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 123  Q
    |||||||||| |||||||||| |||||||| ||| | ||||  | ||||||||| ||||||      |||||| || |||||||||||||||||||||||    
T  29711181 cctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaa 29711082  T
Q  124 catttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcc 223  Q
    || ||| ||  |||||| | ||| |||||||| | |||||||| |   || |  ||||||| ||| | ||||||| |||||||||||||||| |||||||    
T  29711081 cacttcgta--cactctctttcaattccattagtgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatcgcc 29710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 24157232 - 24157413
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 123  Q
    ||||||||||  |||||||||||||||||  ||| ||||||||| ||| ||||| ||||||      |||||| || ||||||||||  |||||||||||    
T  24157232 cctaatcacataccgcataacccggagacagttagggccaacacgcgcttatataagggtgaacttgcttcaccctcaaggtacacaatacttttcacaa 24157331  T
Q  124 catttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttcca 205  Q
    || ||||||  |  | | |||||||||||||||| |||||||| ||| || |  ||||||| ||   |||||||||||||||    
T  24157332 cacttcttagactttatctctcagttccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgttcca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 45715049 - 45714960
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 224  Q
    ||||||||||||||| ||||||| |||||||| |   || |  ||||||||||| ||||||||||||||||||  |||||||||||||||    
T  45715049 cactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgcca 45714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 20120401 - 20120261
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaa 234  Q
    ||||||||||||||| ||||||| |||||||  ||  || |  |||||||||||   ||||||||||||||||| ||||| | | | ||| | |||||||    
T  20120401 cactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccgtgaagatttaacaccagcgtgccgaa 20120302  T
Q  235 agccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||||||||| |||||| |||| ||| || |||||| ||||    
T  20120301 agccgttaccgtcacactggagtattatccgccaccgttgc 20120261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 45258192 - 45258282
Alignment:
Q  138 tctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccat 228  Q
    ||||||| |||| ||||||| |||||||| |   || || |||||||||||   || ||||||||||||||||||||||||||||||||||    
T  45258192 tctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccat 45258282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 24499889 - 24499812
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    |||||||| |||||||||    ||||||||||||||||||  ||  |||||||||||| |||||||||| ||||||||    
T  24499889 tgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagc 24499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 30638716 - 30638654
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcc 78  Q
    |||||| |||| |||||||||||| ||||||||||||| ||||  ||||| ||||||| ||||    
T  30638716 tgtcctcctccatccctaatcacatgccgcataacccgcagacagttatgaccaacacgcgcc 30638654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 19919159 - 19919196
Alignment:
Q  191 gcacctttcgttccaccgcgaagactcatcgccaccat 228  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  19919159 gcacctttcgttccaccacgaagactgatcgccaccat 19919196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 20120519 - 20120455
Alignment:
Q  23 ctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagg 87  Q
    |||| ||| |||||||| |||||||||||  |||||||||||| ||||||| | ||||||| |||    
T  20120519 ctccatccttaatcacacgccgcataacctagagacgattatgaccaacacgcacctatataagg 20120455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 34064374 - 34064117
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| || || ||||||||||  |||||||||||||| |||| ||||||||||| | ||||||||| ||||||      |||||| || |||||||||    
T  34064374 tgtcctacttcgcccctaatcacgtgccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaaggtacac 34064275  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  |||||||||| |||| ||||||| |||||| | ||| || || |||||||||||   |||||||||||| ||||     
T  34064274 atcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcctgcacacacctttcgttctaccgt 34064175  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 267  Q
    ||||||||||  ||  ||| || |||| ||||||| |||||| | | |||||||||||    
T  34064174 gaagactcattaccgtcataccaaaagtcgttaccgtcacactgaaacattctctgcc 34064117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 31295447 - 31295712
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||| |||||||| |||||||||| |  |||||||||| ||||| ||||||||||| | ||||||| | ||||||      |||||| ||  |||||||     
T  31295447 tgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaagggtgaacttgcttcaccctcgaggtacat 31295546  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||| ||  ||||||||||||||| ||||||| |||||||| || ||| |  ||| |||||||  ||| ||||||||||||| |    
T  31295547 atcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgttccacctc 31295646  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||||||| ||| | ||   ||| ||||  ||||  ||||||| ||||||||||||||||| ||||    
T  31295647 gaagactcgtcgtcgccgcaccggaagctattactgtcacacccgagcattctctgccaccattgc 31295712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 12449502 - 12449749
Alignment:
Q  23 ctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggt------gcttcactcttaaggtacacatcactt 116  Q
    ||||| |||||||||||  | |||||||| ||||||  ||||| ||||| | ||||||||| |||||      | ||||| || ||||||||||||||||    
T  12449502 ctccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactt 12449601  T
Q  117 ttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagact 216  Q
    | ||||||| ||||||  |||||||| |||| ||||||||| |||||||| ||| || |  ||||||||| |   |||||||||| ||||| ||||||||    
T  12449602 tccacaacacttcttacacactctttttcagctccattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagact 12449701  T
Q  217 catcgccaccatgccgaaagccgttaccatcacaccggagcattctct 264  Q
    |||| || |  ||||||||| ||||||  ||||||| |||||||||||    
T  12449702 catcaccgcggtgccgaaagtcgttactgtcacaccagagcattctct 12449749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 27860874 - 27861015
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaa 123  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||  ||||      |||||||| || || ||||||||||||||||||||    
T  27860874 cctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaa 27860973  T
Q  124 catttcttatgcactctttctcagttccattactaacttgag 165  Q
    || ||||||  | |||| | |||||||||||||| |||||||    
T  27860974 cacttcttacactctctctttcagttccattactgacttgag 27861015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 19730582 - 19730758
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || ||||||||||||||||| ||| ||| ||||||  ||||||||||||||||||||| | |||||||| |   || |  ||| |||||||    
T  19730582 tgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgc 19730681  T
Q  189 ttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgc 266  Q
     |||| ||||  ||||||| |||||||||| ||||  | ||||||||| |||||||  ||||||||||||||||||||    
T  19730682 atgca-ctttacttccaccacgaagactcaacgccgtcgtgccgaaagtcgttaccgccacaccggagcattctctgc 19730758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 9403272 - 9403105
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || ||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||| | |||||||| ||  ||    |||||||||||    
T  9403272 tgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgagcgtcggagttctaacgtgcctgc 9403173  T
Q  189 ttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattc 261  Q
         | |||| ||||||| ||| ||||||||||  ||||| |  ||||||||||| ||||||||||||||||    
T  9403172 -----cgtttcattccaccacgatgactcatcgctgccatgtcagaagccgttaccgtcacaccggagcattc 9403105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 22497289 - 22497423
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || |||||||||| |||||||||||||| || |||| | |||| | || ||||||||||| |||||||| ||  || |  |||||| ||||    
T  22497289 tgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgc 22497388  T
Q  189 ttgcacctttcgttccaccgcgaagactcatcgcc 223  Q
      ||||||||||||||| |||||||||||||||||    
T  22497389 aagcacctttcgttccatcgcgaagactcatcgcc 22497423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 19276991 - 19277135
Alignment:
Q  18 tcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacat 111  Q
    ||||||||||  |||||||| | ||||||||||| | ||||| ||||| ||||  | ||||||||| ||||||      |||||| || |||||||||||    
T  19276991 tcctgctccgctcctaatcatacgccgcataaccag-agacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacat 19277089  T
Q  112 cacttttcacaacatttcttatgcactctttctcagttccattact 157  Q
    |||||||||||||| ||||||  |||||||||||| ||||||||||    
T  19277090 cacttttcacaacacttcttacacactctttctcatttccattact 19277135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 12424241 - 12424422
Alignment:
Q  31 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaac 124  Q
    ||||||||| ||||||||||||||||||| ||||| |     | ||||||||| ||||||      |||||| ||||||||||||| |||||||||||||    
T  12424241 ctaatcacatgccgcataacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaac 12424340  T
Q  125 atttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccac 206  Q
    | || |||  |  ||| |||||||||||||||| ||||||   ||  || |  |||||||||||  ||||||||||||||||    
T  12424341 actttttagactttctctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccac 12424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 16343664 - 16343542
Alignment:
Q  104 gtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttc 203  Q
    |||||||||||||| ||||||| ||||||  |  ||| |||||||||||||||| |||||||  |   || |  |||||||||||  ||||| |||| ||    
T  16343664 gtacacatcactttccacaacacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctc 16343565  T
Q  204 caccgcgaagactcatcgccacc 226  Q
    ||| |||||||||||||||||||    
T  16343564 cactgcgaagactcatcgccacc 16343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 22692101 - 22692066
Alignment:
Q  191 gcacctttcgttccaccgcgaagactcatcgccacc 226  Q
    ||||||||||||||||||||||||||||||||||||    
T  22692101 gcacctttcgttccaccgcgaagactcatcgccacc 22692066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 20148393 - 20148289
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  |||||||||||| |||||||||||||||||||     || |  |||||| |||| ||||| ||||||||||||||     
T  20148393 tcacttttcacaacactttcta--cactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 20148296  T
Q  211 aagactc 217  Q
    |||||||    
T  20148295 aagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 22184435 - 22184539
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  |||||||||||| |||||||||||||||||||     || |  |||||| |||| ||||| ||||||||||||||     
T  22184435 tcacttttcacaacactttcta--cactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 22184532  T
Q  211 aagactc 217  Q
    |||||||    
T  22184533 aagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 23768293 - 23768214
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcat 168  Q
    ||||| || ||| |||||||||||||||| ||||||| ||||||  |||| | | ||||||| |||||| ||||||||||    
T  23768293 tgctttacccttgaggtacacatcactttccacaacacttcttacacactatctttcagttcaattactgacttgagcat 23768214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 689870 - 689927
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcat 168  Q
    ||||||||||||||| ||  ||  ||| ||||||||||||||||||| ||||||||||    
T  689870 tcacttttcacaacactttatacacacactttctcagttccattactgacttgagcat 689927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 9277338 - 9277419
Alignment:
Q  136 actctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactc 217  Q
    ||||||||||||||||| |||| |||||||| | | || |  |||||| ||||  | ||||||||||||||||| |||||||    
T  9277338 actctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgcaggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 19277175 - 19277260
Alignment:
Q  191 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    |||||||| |||||||||  ||||||||||||| || | ||| || |||||||| ||||| || ||||||||| ||| || |||||    
T  19277175 gcaccttttgttccaccggaaagactcatcgccgccgtaccggaaaccgttaccgtcacatcgaagcattctcagccgccgttgct 19277260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 14080561 - 14080466
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccacc 207  Q
    ||||||||||||||| ||  ||  ||||||||||||||| |||||||||||||||| ||| || |  || |||||||   ||||||||||| |||||    
T  14080561 tcacttttcacaacacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtcccacc 14080466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 34187413 - 34187323
Alignment:
Q  76 gcctatatgagggtg--cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 165  Q
    |||||||| ||||||  |||||| || ||||||||  ||||||| ||| ||| || |||  ||||||||||||||||||||||| |||||||    
T  34187413 gcctatataagggtgagcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgag 34187323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 6772 - 7020
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttcactcttaaggtacac 109  Q
    ||||||| ||| |||||||||||| ||||||||||| ||||||| |||||||||||   ||||||||  ||||||       ||||| || |||||||||    
T  6772 tgtcctgatccatccctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacac 6871  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  ||||| ||||||||| || |||| |||||||| ||| ||    ||||||||| |  ||| ||||||||||||| |    
T  6872 atcacttttcacaacacttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccaccac 6971  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagca 258  Q
    |||||||||||| | || ||||| ||||||||||| ||||||| |||||    
T  6972 gaagactcatcggcgccgtgccggaagccgttaccgtcacaccagagca 7020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 12516364 - 12516110
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||||||||||||||||||||| | |||||||  |||||||| ||||||||||  ||| ||||||| | ||||      |||||| || ||||||||     
T  12516364 tgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaaggcacacctatataaaggtgaacttgcttcaccctcaaggtacat 12516265  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| || |||  || ||||||||||||||||||||||||||||| ||  || |  |||||| ||||  |||||||||||| ||||      
T  12516264 atcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcacctttcgtttcaccat 12516165  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctct 264  Q
    ||||||| |||| |  | ||| | ||| |||| ||||||||||| ||||||||||    
T  12516164 gaagactgatcgtcgtcgtgctggaagtcgttgccatcacaccgaagcattctct 12516110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 14860011 - 14860231
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||||||| ||||||||||| | ||| ||||||| ||||||| ||||| |  |  | ||||||||| ||||||      |||||| || |||||||||    
T  14860011 tgtcctgctctgtccctaatcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacac 14860110  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||   ||| |||||||||||||||||| | ||||| |||| || |  || ||||||||  ||||||||||||||||| |    
T  14860111 atcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgagaatcagagtgctaatgtgcctgcaagcacctttcgttccaccac 14860210  T
Q  210 gaagactcatcgccaccatgc 230  Q
    ||||| |||||||||||||||    
T  14860211 gaagattcatcgccaccatgc 14860231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 431228 - 431493
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| |||| |||||||||||| || |||||||||| ||||  |||||  |||||| ||||||||| ||||||      |||||| || |||| |||     
T  431228 tgtcctcctccatccctaatcacacgctgcataacccgcagacagttatgagcaacacgcgcctatataagggtggacatgcttcaccctcaagggacaa 431327  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
     |||||||||||| || ||   | |||||||||||||||||||||| | |||||||| || ||| |  |||||| |||   ||||||||| |||||||||    
T  431328 ttcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccgc 431427  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    ||||||||| | ||| | | ||| ||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  431428 gaagactcaacaccagcctaccggaagccgttaccgtcaaaccggagcattatctgcaaccgttgc 431493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 25496117 - 25495863
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| | |||| |||||||||| ||||||||||||||||||| |||||  ||||   ||||||||| ||||||      ||||||  |||||||||||    
T  25496117 tgtcctacaccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgcttcacctttaaggtacac 25496018  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||  ||||  ||||||  |||||||||||||||  |||||| |||||||  ||| || |  |||||| ||||  ||||||| ||  |||||||    
T  25496017 atcacttttttcaactcttcttacacactctttctcagtttgattactgacttgag-gtcagagtgctaacgtgtctgcaggcaccttacgccccaccgc 25495919  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctg 265  Q
    ||||| ||||| ||  | ||||| ||||||||||| |||||||||| |||||||||    
T  25495918 gaagaatcatcaccgtcgtgccggaagccgttaccgtcacaccggaacattctctg 25495863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 12731473 - 12731730
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| ||| ||||| ||||||| ||||||||||||| ||||  ||||| ||| | ||| | ||||| ||||||      |||||| || ||||| |||    
T  12731473 tgtcctactctgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttgcttcaccctcaaggttcac 12731572  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| | || ||||| ||  ||    ||| ||  ||   ||||| ||||||||||| |    
T  12731573 atcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcggagtactaacatggttgtaggcaccattcgttccacctc 12731672  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 267  Q
    |||||||| ||||| || ||||| ||||| ||||| |||||||| | |||||||||||    
T  12731673 gaagactcttcgccgccgtgccggaagcctttaccgtcacaccgaaacattctctgcc 12731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 12108596 - 12108387
Alignment:
Q  18 tcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtaca-ca 110  Q
    |||| |||||||||||||||||||||||||||||||||| |  ||||| ||||| |  |||||||| ||||      |||||||| || ||||||||       
T  12108596 tcctcctccgtccctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtacattc 12108497  T
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||| ||| || |||| || ||   || ||||||||||||||||||||||||||||| ||  || |  ||| ||| ||| |||||||||| ||||||| ||    
T  12108496 tcattttccagaaca-ttatttcacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacg 12108398  T
Q  211 aagactcatcg 221  Q
    | |||||||||    
T  12108397 aggactcatcg 12108387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 28723787 - 28723902
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||||||  ||  |||||||||| |||||||||| | |||||||| |   |  | ||||||||||  | |||| |||||||||||||||    
T  28723787 tcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcctattagcacatttcgttccaccgcg 28723886  T
Q  211 aagactcatcgccacc 226  Q
    ||||||||| ||||||    
T  28723887 aagactcattgccacc 28723902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 12252071 - 12251954
Alignment:
Q  106 acacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttcca 205  Q
    |||||||||||||||||||| ||||||  |||||||||||| || | ||||| |||||||  ||| || |  ||| ||||||| ||||||||| || | |    
T  12252071 acacatcacttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtccta 12251972  T
Q  206 ccgcgaagactcatcgcc 223  Q
      ||||||||||||||||    
T  12251971 ttgcgaagactcatcgcc 12251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 21649424 - 21649376
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 226  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  21649424 aacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccacc 21649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 21342300 - 21342405
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||| |||||||| |||||||||||||| |||||||| |   |  || ||||||||||| |  ||||||||| |||||| |    
T  21342300 tcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttgtactgttaacgtgcctgcatatacctttcgtcccaccgtg 21342399  T
Q  211 aagact 216  Q
    ||||||    
T  21342400 aagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 1770904 - 1770848
Alignment:
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    |||||||||||||||| ||  ||  ||||||| ||||||||||||||||||||||||    
T  1770904 atcacttttcacaacactttctacacactcttcctcagttccattactaacttgagc 1770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 17485548 - 17485604
Alignment:
Q  26 cgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctata 82  Q
    |||| ||||||||| || |||||||||||||||||||||| ||||| | ||||||||    
T  17485548 cgtcactaatcacacgcagcataacccggagacgattatgaccaacgcgcgcctata 17485604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 21652641 - 21652557
Alignment:
Q  191 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||| |||||||||||| ||||||||||||||||||   ||| |||||||||||    ||| |||||||||||| ||||| ||||    
T  21652641 gcacgtttcgttccaccacgaagactcatcgccaccgcaccggaagccgttaccgattcactggagcattctctaccaccgttgc 21652557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 9781514 - 9781565
Alignment:
Q  106 acacatcacttttcacaacatttcttatgcactctttctcagttccattact 157  Q
    |||||||||||||||||||| ||||||  |||||||| |||||| |||||||    
T  9781514 acacatcacttttcacaacacttcttacacactctttttcagttacattact 9781565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 17143762 - 17143817
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| ||||||||    
T  17143762 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 17143817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 12256996 - 12256952
Alignment:
Q  26 cgtccctaatcacaagccgcataacccggagacgattatggccaa 70  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||    
T  12256996 cgtccctaatcacacgccgcataactcgaagacggttatggccaa 12256952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 23067 - 22800
Alignment:
Q  14 catgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtac 107  Q
    ||||||||||||||||||||||||||  |||||||||| ||||| | ||||  ||||| | | |||| || ||||||      |||||| || |||||||    
T  23067 catgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctcaaggtac 22968  T
Q  108 acatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccacc 207  Q
    || ||||||||||||||| ||||||  |||  |||||||||||||||||| |||||||| ||| || |  |||||||| ||  ||||||||||| ||||     
T  22967 acgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgctaacgtgcccgcaggcacctttcgtcccact 22868  T
Q  208 gcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||||||| |||||||    | |||||||   ||||| ||||| ||||||||||||| ||| ||||||    
T  22867 gcgaagacccatcgccgttgtaccgaaagtttttaccgtcacatcggagcattctctaccatctttgc 22800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 10909 - 11092
Alignment:
Q  92 ttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttg 191  Q
    ||||| || ||||||||||||||||||||||||| ||||||  |||||| | |||||||||||| | |||||||| |   || |  ||||||||||| |     
T  10909 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcctgcata 11008  T
Q  192 cacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    ||||||| ||||||||||  ||| |||||||| || | ||| ||| |||||||  | || ||||||||||| ||||||| ||||    
T  11009 caccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttaccgactcatcggagcattctttgccaccgttgc 11092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 23728732 - 23728942
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttcactcttaaggtacac 109  Q
    |||||||||| ||||||||||||| |||||||||   | ||||| |||||||||||   ||||||||| ||||||       ||||| || |||||||||    
T  23728732 tgtcctgctctgtccctaatcacatgccgcataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcaccctcaaggtacac 23728831  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    |||||||||||||||| ||||||  |||||||||||| |||||||| | |||||||| ||| |  |  ||||||||||| | ||||||||||| ||||||    
T  23728832 atcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccacctttcgtt-caccgc 23728930  T
Q  210 gaagactcatcg 221  Q
    ||||||||||||    
T  23728931 gaagactcatcg 23728942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 16299495 - 16299739
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg--cttcactcttaaggtacacatca 113  Q
    |||||||||||||| ||||| ||| |||||||||||||  ||||||||||||||||||||| |||||| ||||||  |||    ||| | ||||||||||    
T  16299495 tgtcctgctccgtctctaattacacgccgcataacccg--gacgattatggccaacacacgtctatataagggtgaactt---gcttcatgtacacatca 16299589  T
Q  114 cttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaag 213  Q
     ||||||||||| |||||| |||||||||||||||| ||||||| |||||| | ||  || |  || |||| |||   ||| |||||||||||||| |||    
T  16299590 tttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aag 16299688  T
Q  214 actcatcgccaccatgccgaaagccgttaccatcacaccggagcattctct 264  Q
    |||||||||| || |  || ||| ||||||  | |||||||||||||||||    
T  16299689 actcatcgccgccgtatcggaagtcgttacggtaacaccggagcattctct 16299739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 4601399 - 4601665
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 109  Q
    |||||| |||||  |||||||||| | |||||||||||||||||  |||| ||||  | ||| ||||| ||||||      |||||| || |||| ||||    
T  4601399 tgtcctactccgcacctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggacac 4601498  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 209  Q
    ||||  ||||||| || || |||  || | |||||||||| ||||||| |||||||| ||  || |  |||||||||||   ||||||||||||||||||    
T  4601499 atcaaatttcacagcacttattacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgc 4601598  T
Q  210 gaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    ||||||| |||||| |||||||| || |  ||||| ||||||| ||||||| ||||||||| |||||    
T  4601599 gaagacttatcgccgccatgccggaaacaattaccgtcacaccagagcattttctgccaccgttgct 4601665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 52565755 - 52565502
Alignment:
Q  18 tcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacat 111  Q
    |||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||  ||| |||| ||| ||      |||||| || ||| ||    |    
T  52565755 tcctcctccgtccctaatcacatgctgcataactcggagacgattatgaccaacac--gccaatataaggatgaacttgcttcaccctcaagttatgatt 52565658  T
Q  112 cacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcga 211  Q
    |||||||||||||| ||  |  ||||||||| |||||||| ||||| |||||||| ||| || |  |||||| ||||  ||||||||||||||| | |||    
T  52565657 cacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttccatcacga 52565558  T
Q  212 agactcatcgccaccatgccgaaagccgttaccatcacac-cggagcattctctgc 266  Q
    | ||||||||||||||| ||| |||  |||||| |||||| |||||||||||||||    
T  52565557 aaactcatcgccaccataccggaagttgttaccgtcacactcggagcattctctgc 52565502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 14255051 - 14255208
Alignment:
Q  119 cacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactca 218  Q
    ||||||| ||||||  ||||||||||||||| ||||| | |||||||| |   || |  | ||||| |||  ||||| ||||||||||| ||||||||||    
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactca 14255150  T
Q  219 tcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    ||||| ||  |||| ||||| ||||| |||||||||||||||||||||| || |||||    
T  14255151 tcgccgccgcgccggaagccattaccgtcacaccggagcattctctgccgccgttgct 14255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 22414853 - 22414738
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  |||| ||| |||||| ||||||| |||||||| ||| || |  |||||||||||  |||||||||||||||||||     
T  22414853 tcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgca 22414754  T
Q  211 aagactcatcgccacc 226  Q
    ||||||||||| ||||    
T  22414753 aagactcatcgtcacc 22414738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 25408196 - 25408066
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || |||| |||||||||||||||||||| ||||||  |||||| | |||||| ||||||| ||||||||||   || |  |||||| ||||    
T  25408196 tgcttcaccctcaagggacacatcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgc 25408097  T
Q  189 ttgcacctttcgttccaccgcgaagactcat 219  Q
      ||||||||| |||||||||  ||||||||    
T  25408096 aggcacctttcattccaccgcagagactcat 25408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 21682516 - 21682767
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 123  Q
    |||||||||| || ||||||||| ||||| ||||||  |||| ||||||||||| ||||||      | |||| || ||||||||||| |||||||||||    
T  21682516 cctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacattacttttcacaa 21682615  T
Q  124 catttcttatgcactct-ttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgc 222  Q
     ||||||||  |||||| |||| |||||||||||| |||||||| |   || |  ||||| |||    |||||||||||||||| ||  |||||||||||    
T  21682616 tatttcttacacactctcttct-agttccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcgc 21682714  T
Q  223 caccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    | || | ||| |||| ||||||  | || |  |||||||||||||||| ||||    
T  21682715 cgccgtaccggaagctgttaccgacccatcaaagcattctctgccaccgttgc 21682767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 48637596 - 48637511
Alignment:
Q  144 tcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc-gaagactcatcgccaccat 228  Q
    |||||||||||||| |||||||| ||| || |   ||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  48637596 tcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcgccaccat 48637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 5671848 - 5671793
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||||||||||||    
T  5671848 tcacttttcacaacactttctacacactctttctcagttccattactaacttgagc 5671793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 16030473 - 16030358
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  |||||||  |||||||||||||| ||||||||||   |  |  |||||||||||   |||||||| |||||||| |    
T  16030473 tcacttttcacaacactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccgtg 16030374  T
Q  211 aagactcatcgccacc 226  Q
    ||||||||||||||||    
T  16030373 aagactcatcgccacc 16030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 5459788 - 5459836
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 226  Q
    ||||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  5459788 aacgtacctgcatgcacctttcgtcccaccacgaagactcatcgccacc 5459836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 12177464 - 12177364
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||  ||  || |  ||||||| ||   ||||||||||||||||||||    
T  12177464 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgcg 12177365  T
Q  211 a 211  Q
    |    
T  12177364 a 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 24576493 - 24576708
Alignment:
Q  14 catgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtac 107  Q
    |||||||| |||||  |||||||||| | ||||||||| |||| || |||||  |||| |  |||||||| ||||||      |||||| || |||||||    
T  24576493 catgtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtac 24576592  T
Q  108 acatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccacc 207  Q
    |||| ||||||||||||| ||||||  ||||| || | |||||||||||| |||||||| ||| || || |||||||||||  ||||||||||||||||     
T  24576593 acattacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccact 24576692  T
Q  208 gcgaagactcatcgcc 223  Q
    ||  || |||||||||    
T  24576693 gcagagtctcatcgcc 24576708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 21416901 - 21416657
Alignment:
Q  32 taatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaaca 125  Q
    |||||||| ||||||||||||||||||| ||||| ||||| | | ||||||  ||||||      |||||| ||||||||||   ||| |||||||||||    
T  21416901 taatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaaca 21416802  T
Q  126 tttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccac 225  Q
     ||  ||  ||||||||||||||| ||||||| |||||||| ||  || |  |||| || |||   ||||||  | |||| |||||| ||||| |||| |    
T  21416801 ctttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacaccttcagatccatcgcgaatactcaacgccgc 21416702  T
Q  226 catgccgaaagccgttaccatcacaccggagcattctctgccacc 270  Q
    | | | ||||||| ||||| ||||||||||||||| |||||||||    
T  21416701 cgtactgaaagccattaccgtcacaccggagcattatctgccacc 21416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 17319657 - 17319747
Alignment:
Q  136 actctttctcagttccattactaacttgagcatcaaagggtc---aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcc 223  Q
    |||||||||||||||||||||| |||||| ||||| || |     ||| ||||||| |||||||||||||||||| |||||||||||||||    
T  17319657 actctttctcagttccattactgacttgaacatcagagtgctgctaacatgcctgcatgcacctttcgttccaccacgaagactcatcgcc 17319747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 18323021 - 18322915
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||||||  ||  || ||||||||||||| |||||| |||||||| |   || || ||| || |||| ||||||||| |||||||||||    
T  18323021 tcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccgcg 18322922  T
Q  211 aagactc 217  Q
    |||||||    
T  18322921 aagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 3459521 - 3459661
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaa 234  Q
    ||||||| ||||||||||||||| ||||||||  |  || |  |||||||||||  ||||||||||  |||||||||||||||||  || ||||   |||    
T  3459521 cactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcgc-ccaccgcgaagactcattaccgccatattgaa 3459619  T
Q  235 agccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    | | |||||||||||||  |||||||||||||| || |||||    
T  3459620 aactgttaccatcacactagagcattctctgccgccgttgct 3459661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 4565384 - 4565459
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttga 164  Q
    |||||||| || |||||||||| |||||||||||||| ||||||| |  ||| | |||||| ||||||||||||||    
T  4565384 tgcttcaccctcaaggtacacaacacttttcacaacacttcttatactttctctttcagtttcattactaacttga 4565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 11776155 - 11776299
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttcactcttaaggtacac 109  Q
    |||| |||||| ||| |||||||| ||||||| | ||||||||| ||||| ||||| | | ||||||| | ||||       ||||| || ||||||||     
T  11776155 tgtcatgctccatccttaatcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacat 11776254  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccatt 154  Q
    |||||||||| ||||| | ||||  ||||||||||||||||||||    
T  11776255 atcacttttcccaacactccttaaacactctttctcagttccatt 11776299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 20055590 - 20055493
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 275  Q
    |||||||||||   |||| |||||||||||||||||| |||||||| || | ||| ||||||||||     || ||||||||||||||||||| ||||    
T  20055590 aacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccggaagccgttactgattcatcggagcattctctgccaccgttgc 20055493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 15058046 - 15057998
Alignment:
Q  178 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 226  Q
    ||||||||||| |||||||||||||||||| | ||||||||||| ||||    
T  15058046 aacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcacc 15057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 24071006 - 24070950
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaaca 72  Q
    |||||| ||||||||||||||||| ||||||||||||  ||||| ||||| ||||||    
T  24071006 tgtccttctccgtccctaatcacacgccgcataacccatagacggttatgaccaaca 24070950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 6928103 - 6928157
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 165  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||    
T  6928103 tcacttttcacaacactttctacacactctttctcagttccattactgacttgag 6928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 23269243 - 23269209
Alignment:
Q  192 cacctttcgttccaccgcgaagactcatcgccacc 226  Q
    |||||||||||||||||| ||||||||||||||||    
T  23269243 cacctttcgttccaccgcaaagactcatcgccacc 23269209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 13765043 - 13764950
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccat 228  Q
    ||||||||||||||| ||||||| |||||| |||   ||  | |||||||||||   ||||||||||  |||||||||||||| || |||||||    
T  13765043 cactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgtcacaccgcgaagactcttcaccaccat 13764950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 23243884 - 23243819
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccatt 154  Q
    |||||||| || ||| ||||||||||||||||||||| ||||||  |||| | | |||||||||||    
T  23243884 tgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttccatt 23243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 215437 - 215295
Alignment:
Q  30 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 123  Q
    |||||||||| ||||||||||||||||||  |||||  ||||||||| |||||| ||| ||      |||||| || |||||||||| ||||||||||||    
T  215437 cctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaa 215338  T
Q  124 catttcttatgcactctttctcagttccattactaacttgagc 166  Q
    || ||||||  |||||| | |||||| ||||||| ||||||||    
T  215337 cacttcttacacactctctttcagtttcattactgacttgagc 215295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 35307 - 35185
Alignment:
Q  135 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaa 234  Q
    ||||||||||||||||| ||||| |||||||  ||| || |  |||||||||||  |||| ||||||| |||  |||||||||| |||| || | ||| |    
T  35307 cactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgcactacgaagactcaacgccgccgtaccgga 35208  T
Q  235 agccgttaccatcacaccggagc 257  Q
    |||||||||||||||||||||||    
T  35207 agccgttaccatcacaccggagc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 5038 - 4953
Alignment:
Q  191 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 276  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||  |||||||||| ||||||||||| || |||||    
T  5038 gcacctttcgttccacctcgaagactcttcgccaccgtgccggaagcctttactgtcacaccggaacattctctgccgccgttgct 4953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 165 - 311
Alignment:
Q  27 gtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacaca-tcacttttc 119  Q
    |||||||||||||  | |||||||||||||||  ||||| ||||| | |||||| || ||||||      |||||| || ||||||||   |||||||||    
T  165 gtccctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttc 264  T
Q  120 acaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    |||||| ||||||  ||||||||||||||||||||||| ||||||||    
T  265 acaacacttcttacacactctttctcagttccattactgacttgagc 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 40959 - 40765
Alignment:
Q  32 taatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaaca 125  Q
    |||||||| ||||||||||||||||||| ||||| ||| | ||||||||||  ||||      |||||||| || |||||||||||||||||||| ||||    
T  40959 taatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataaca 40860  T
Q  126 tttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatc 220  Q
     ||| ||  | |||| | |||||||||| ||| |||||||| |   || |  ||||||||||| ||| |||||||||| ||| |  |||||||||    
T  40859 cttcctacactctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctaccacagagactcatc 40765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 95823 - 95924
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  || ||||||||||||||||||||||||||||||||| |  ||| |  |||||||||||  | |||||| || ||||||||    
T  95823 tcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcaggaaccttttgtcccaccgcg 95922  T
Q  211 aa 212  Q
    ||    
T  95923 aa 95924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 7963 - 7848
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 210  Q
    ||||||||||||||| ||  ||  |||||||||||| || ||||||| | |||||| | | || |  ||||||||| | |||||||||| |||||||| |    
T  7963 tcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccgtg 7864  T
Q  211 aagactcatcgccacc 226  Q
    ||||||||||||||||    
T  7863 aagactcatcgccacc 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 6398 - 6227
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 188  Q
    |||||||| || |||||||   ||||||||||||||| ||  ||  |||| |||||||||||||||||| |||||||| || ||| |  |||||||||||    
T  6398 tgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgcctgc 6299  T
Q  189 ttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcatt 260  Q
       ||||||| ||||||| ||  ||||||| ||   || | ||||||| ||||||| ||||||| |||||||    
T  6298 aaacaccttttgttccactgcagagactcaacgttgccgtaccgaaagtcgttaccgtcacaccagagcatt 6227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 20500 - 20618
Alignment:
Q  101 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcg 200  Q
    |||||||||||||||||||| |||||||  ||  ||||||||||||||||| ||| | |||||||| ||| || |  ||| ||  ||   ||||||||||    
T  20500 aaggtacacatcacttttcataacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcg 20599  T
Q  201 ttccaccgcgaagactcat 219  Q
    ||||||||||||| |||||    
T  20600 ttccaccgcgaagcctcat 20618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 73817 - 73963
Alignment:
Q  113 acttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaa 212  Q
    ||||||||||||| ||  || ||||||||| |||  ||||||||||| |||||| ||| || |  ||| ||||||  ||||||||| |||||||||| ||    
T  73817 acttttcacaacactttctacgcactctttttcaaatccattactaatttgagcgtcagagtgctaacatgcctgaatgcaccttttgttccaccgcaaa 73916  T
Q  213 gactcatcgccaccatgccgaaagccgttaccatcacaccggagcat 259  Q
    | |||| |  | || ||||  |||| |||||||||||||||||||||    
T  73917 ggctcaacatcgccgtgccagaagctgttaccatcacaccggagcat 73963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 11691 - 11550
Alignment:
Q  16 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttcactcttaaggtacac 109  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||||  ||||| ||| | ||| | ||||| ||||||       ||||| || ||||| |||    
T  11691 tgtcctactccgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttggttcaccctcaaggt-cac 11593  T
Q  110 atcacttttcacaacatttcttatgcactctttctcagttccatta 155  Q
    ||||||||||||||||   ||||| |||||||||||||||||||||    
T  11592 atcacttttcacaaca---cttatacactctttctcagttccatta 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 24450 - 24400
Alignment:
Q  208 gcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagca 258  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||||    
T  24450 gcgaagactcatcgccgccataccggaagccgttaccgtcacaccggagca 24400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 21609 - 21685
Alignment:
Q  89 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 165  Q
    |||||||| || ||||||||||||||||| ||||||| ||||||  |||||| | |||||| || |||| |||||||    
T  21609 tgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgag 21685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 68815 - 68868
Alignment:
Q  111 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 166  Q
    ||||||||||||||| ||  |||  |||||||||||||||||||||||||||||||    
T  68815 tcacttttcacaacactttctat--actctttctcagttccattactaacttgagc 68868  T

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Target: scaffold0291 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 8508 - 8701
Alignment:
Q  31 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg--cttcactcttaaggtacacatcacttttcacaacattt 128  Q
    ||||||| | || |||||||||||||||| |||||  |||| | ||||||||| ||||||   ||||| |||||||||    ||||||||||||||| ||    
T  8508 ctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtgaagttcacccttaaggtatgattcacttttcacaacactt 8607  T
Q  129 cttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcc 223  Q
      ||  |||| ||| |||||| ||||||| |||||||| || ||| |  |||||| ||||   |||||||  ||||||||| |||||||| ||||    
T  8608 tctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtg-ctgcaaacaccttttattccaccgcaaagactcaacgcc 8701  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 29368 - 29398
Alignment:
Q  190 tgcacctttcgttccaccgcgaagactcatc 220  Q
    |||||||||||||||||||||||||||||||    
T  29368 tgcacctttcgttccaccgcgaagactcatc 29398  T

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