View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3664_low_8 (Length: 267)
Name: NF3664_low_8
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3664_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 36232020 - 36231794
Alignment:
| Q |
23 |
cagagaatcaaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatcttt |
122 |
Q |
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| T |
36232020 |
cagagaatcaaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatcttt |
36231921 |
T |
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| Q |
123 |
gcaacaacaagttcaatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231920 |
gcaacaacaagttcaatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagag |
36231821 |
T |
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| Q |
223 |
gatgtatcaattgctactcttccacct |
249 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36231820 |
gatgtatcaattgctactcttccacct |
36231794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 31869057 - 31868948
Alignment:
| Q |
31 |
caaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaac |
130 |
Q |
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|||||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| ||||| || ||||||| |
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| T |
31869057 |
caaagagcagatgcagcaaatagtatggtttatgaagctaatttaaggttaagagatcctgtttatggatgcatgggtgcaatatcatcattacaacaac |
31868958 |
T |
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| Q |
131 |
aagttcaatc |
140 |
Q |
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|||| ||||| |
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| T |
31868957 |
aagtccaatc |
31868948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 35919662 - 35919729
Alignment:
| Q |
31 |
caaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatgg |
98 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||||||| |||| | || |||||||||||||| |
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| T |
35919662 |
caaagagcagatgcagtaaacagtttagtctatgaagcaaatgcaagagtgagggatccagtttatgg |
35919729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 43200753 - 43200646
Alignment:
| Q |
33 |
aagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaa |
132 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
43200753 |
aagagcagatgcagcaaatagtcttgtttatgaagcaaatgtgaggctaagagatccagtttatggatgcatgggtgcaatttctgcattgcaacaacag |
43200654 |
T |
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| Q |
133 |
gttcaatc |
140 |
Q |
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|||||||| |
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| T |
43200653 |
gttcaatc |
43200646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 26665842 - 26665914
Alignment:
| Q |
29 |
atcaaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatg |
101 |
Q |
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|||||||| |||| |||| || |||||||||| ||||||||||| |||| | |||||||| ||||||||||| |
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| T |
26665842 |
atcaaagatcagaagcagtgaacagtttagtttttgaagcaaatgcaagagtgagagatcctgtttatggatg |
26665914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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