View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3664_low_9 (Length: 244)

Name: NF3664_low_9
Description: NF3664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3664_low_9
NF3664_low_9
[»] chr7 (4 HSPs)
chr7 (1-238)||(19721043-19721280)
chr7 (159-229)||(19888564-19888634)
chr7 (154-239)||(19879692-19879777)
chr7 (154-229)||(19778744-19778819)
[»] chr2 (4 HSPs)
chr2 (154-239)||(18909637-18909722)
chr2 (154-239)||(18914385-18914470)
chr2 (154-239)||(18921533-18921618)
chr2 (196-239)||(20578958-20579001)
[»] chr3 (2 HSPs)
chr3 (156-236)||(32579708-32579788)
chr3 (155-233)||(12735669-12735747)
[»] scaffold0464 (1 HSPs)
scaffold0464 (155-233)||(7183-7261)
[»] chr8 (1 HSPs)
chr8 (198-240)||(42693671-42693713)
[»] chr6 (1 HSPs)
chr6 (165-229)||(14748550-14748614)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19721043 - 19721280
Alignment:
Q  1 aactattttgaaacctaccttttcccctatataaagacttgtaagaacaacacacatatactcgacactttgtcagtaaccaacatttgcctctcatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19721043 aactattttgaaacctaccttttcccctatataaagacttgtaagaacaacacacatatactcaacactttgtcagtaaccaacatttgcctctcatgaa 19721142  T
Q  101 ttcaaacggcgatccaacttccatgctgctagtcctcttgaacgaaatcctatcagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19721143 ttcaaacggcgatccaacttccatgctgctagtcctcttgaacgaaatcctatcagaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaa 19721242  T
Q  201 tgtgtctgcaaatcattgaaaaccctaatctctgatcc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19721243 tgtgtctgcaaatcattgaaaaccctaatctctgatcc 19721280  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 19888634 - 19888564
Alignment:
Q  159 atcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaat 229  Q
    ||||| ||||| |||||| |||||||| | |||||| | |||||||| |||||||||| ||||||||||||    
T  19888634 atcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaat 19888564  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 19879777 - 19879692
Alignment:
Q  154 cagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcct 239  Q
    |||| ||||| ||||| |||||| |||||||| | |||||| | |||||||| |||||||| | |||||||||||| ||| |||||    
T  19879777 cagacatcctttcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttctaatcct 19879692  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 19778744 - 19778819
Alignment:
Q  154 cagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaat 229  Q
    |||| ||||| ||||| |||||| |||||||| | |||||| | |||||||| |||||||| | ||||||||||||    
T  19778744 cagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaat 19778819  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 18909722 - 18909637
Alignment:
Q  154 cagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcct 239  Q
    |||||||||| ||||| |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||| ||| |||||    
T  18909722 cagaaatcctttcacgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatcct 18909637  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 18914470 - 18914385
Alignment:
Q  154 cagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcct 239  Q
    |||||||||| || || |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||| ||| |||||    
T  18914470 cagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatcct 18914385  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 18921618 - 18921533
Alignment:
Q  154 cagaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcct 239  Q
    |||||||||| ||||| |||||  | |||||| |||||||||||||||| || ||||||||||||||||||||||| ||| |||||    
T  18921618 cagaaatcctttcacgtcttccagtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatcct 18921533  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 20579001 - 20578958
Alignment:
Q  196 tgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcct 239  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||    
T  20579001 tgaaacgtgtttgcaaatcatggaaaaccctaatctctgatcct 20578958  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 32579788 - 32579708
Alignment:
Q  156 gaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgat 236  Q
    ||||||||||||||||||||| |||||||| | |||||| | |||||||| |||||||||| |||||||||||| ||||||    
T  32579788 gaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctgat 32579708  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 12735747 - 12735669
Alignment:
Q  155 agaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctct 233  Q
    |||||| || ||||| |||||| ||||||||||||||||| | |||||||| |||||||||| ||||||||||||||||    
T  12735747 agaaattctttcacgacttcctgtcaaaactttgatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatctct 12735669  T

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Target: scaffold0464 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 7183 - 7261
Alignment:
Q  155 agaaatcctatcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctct 233  Q
    |||||| || ||||| |||||| |||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||    
T  7183 agaaattctttcacgacttcctgtcaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctct 7261  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 42693671 - 42693713
Alignment:
Q  198 aaatgtgtctgcaaatcattgaaaaccctaatctctgatcctc 240  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  42693671 aaatgtgtctgcaaatcatggaaaactctaatctctgatcctc 42693713  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 14748550 - 14748614
Alignment:
Q  165 tcacgccttcctttcaaaactttgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaat 229  Q
    ||||| || ||| |||||||| | |||||| | |||||||| |||||||||| ||||||||||||    
T  14748550 tcacgactccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaat 14748614  T

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