View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3665_low_1 (Length: 417)

Name: NF3665_low_1
Description: NF3665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3665_low_1
NF3665_low_1
[»] chr2 (9 HSPs)
chr2 (1-403)||(1979188-1979589)
chr2 (1-403)||(10733068-10733460)
chr2 (7-137)||(4789801-4789931)
chr2 (315-403)||(4789714-4789802)
chr2 (289-354)||(24526163-24526228)
chr2 (264-403)||(24314754-24314891)
chr2 (289-354)||(24532834-24532899)
chr2 (164-224)||(32219458-32219518)
chr2 (244-360)||(42435870-42435985)
[»] chr5 (1 HSPs)
chr5 (1-401)||(14460631-14461030)
[»] chr3 (1 HSPs)
chr3 (181-403)||(8354627-8354849)
[»] chr7 (3 HSPs)
chr7 (61-396)||(12817827-12818165)
chr7 (150-350)||(22972431-22972631)
chr7 (150-348)||(22964187-22964385)
[»] chr1 (3 HSPs)
chr1 (1-137)||(18548462-18548598)
chr1 (315-403)||(18548375-18548463)
chr1 (172-341)||(18168841-18169010)
[»] chr6 (2 HSPs)
chr6 (264-363)||(19144143-19144241)
chr6 (264-363)||(19101564-19101662)
[»] chr8 (3 HSPs)
chr8 (63-113)||(31827626-31827676)
chr8 (150-350)||(12586026-12586226)
chr8 (234-360)||(11405289-11405414)
[»] chr4 (1 HSPs)
chr4 (306-351)||(17354733-17354778)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1979188 - 1979589
Alignment:
Q  1 caaaggatagattacaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979188 caaaggatagattgcaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 1979287  T
Q  101 ggatgatgcattcgtgttacaaggaaaaccaaggcgtaaacttcaaaaggtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgat 200  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  1979288 ggatgatgcattcgtgttacaaggaaaacca-ggtgtaaacttcaaaaggtttcaaacttgcatcactttcaaattgaggtattttatcatgtgattgat 1979386  T
Q  201 agacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979387 agacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttg 1979486  T
Q  301 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaagga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979487 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaagga 1979586  T
Q  401 tgt 403  Q
    |||    
T  1979587 tgt 1979589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 10733068 - 10733460
Alignment:
Q  1 caaaggatagattacaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 100  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10733068 caaagaatagattgcaaaagatgagagaagatggctgacataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 10733167  T
Q  101 ggatgatgcattcgtgttacaaggaaaaccaaggcgtaaacttcaaaaggtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgat 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||| |||    
T  10733168 ggatgatgcattcatgttacaaggaaaaccaaggcgtaaacttcaaaaggtttcaaacttgtatcactttcaagttgag---------catgtgattgat 10733258  T
Q  201 agacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttg 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10733259 agacaacttcaagagcttaataatcgattcatcgaggtgagtagtgaattgcttatt-gtgtagcaagcttaaatccaagagattcattttttgcatttg 10733357  T
Q  301 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaagga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10733358 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatgga 10733457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 4789931 - 4789801
Alignment:
Q  7 atagattacaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatatggatga 106  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4789931 atagattgcaaaagatgagagaagatggctgacataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatatggatga 4789832  T
Q  107 tgcattcgtgttacaaggaaaaccaaggcgt 137  Q
    |||||||||||||||||||||||||||||||    
T  4789831 tgcattcgtgttacaaggaaaaccaaggcgt 4789801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 4789802 - 4789714
Alignment:
Q  315 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaaggatgt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4789802 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaattaacttgaaaattatatcatggatgt 4789714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 24526228 - 24526163
Alignment:
Q  289 tttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctt 354  Q
    |||||||||||||||||||||||||| | || |||| ||||||| |||| |||||||||| |||||    
T  24526228 tttttgcatttgacaaggagaagttgatcaaattggatcgatttcatccgtcagaattttattctt 24526163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 403
Target Start/End: Complemental strand, 24314891 - 24314754
Alignment:
Q  264 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 363  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||| |||| ||| | |||||||  | ||||||||||   |||||||||    
T  24314891 gcaagtttaaatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactc-aatttatcccactgaattttctttaatggagctta 24314794  T
Q  364 cgggaataggcaatcaacttgaaaattatatcaaggatgt 403  Q
     | || |   ||||||||||||||||||||| | ||||||    
T  24314793 tgagacttcacaatcaacttgaaaattatattatggatgt 24314754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 24532899 - 24532834
Alignment:
Q  289 tttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctt 354  Q
    |||||||||||||||| ||||||||  | || |||| ||||||| |||| ||||||||||||||||    
T  24532899 tttttgcatttgacaatgagaagttaatcaaattggatcgatttcatccgtcagaattttcttctt 24532834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 32219518 - 32219458
Alignment:
Q  164 tcactttcaagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataat 224  Q
    |||||||  |||||||||||||||||| ||||| || | |||||||||||| |||||||||    
T  32219518 tcactttggagttgaggtattttatcaagtgattgacacacaacttcaagaacttaataat 32219458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 360
Target Start/End: Original strand, 42435870 - 42435985
Alignment:
Q  244 gtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcaga 343  Q
    ||||| ||| ||||||  ||||||  ||||||  |||||||||| ||| | ||||| | |||||||||||| | ||||| |||||||||| || | || |    
T  42435870 gtgaaatgcatatttgcatagcaaatttaaatttaagagattcagtttctacatttaataaggagaagttgatcaatttagctcgattttttcga-cata 42435968  T
Q  344 attttcttctttggagc 360  Q
    |||||||||||||||||    
T  42435969 attttcttctttggagc 42435985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 14461030 - 14460631
Alignment:
Q  1 caaaggatagattacaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 100  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14461030 caaaggatagattgcaaaagatgagagaagatggctgacataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 14460931  T
Q  101 ggatgatgcattcgtgttacaaggaaaaccaaggcgtaaacttcaaaaggtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgat 200  Q
    |||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  14460930 ggatgatgcattcgtgttacaaggaaaatca-ggtgtaaacttcaaaaggtttcaaacttgcatcactttcaaattgaggtattttatcatgtgattgat 14460832  T
Q  201 agacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14460831 agacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttg 14460732  T
Q  301 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaagga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14460731 acaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaagga 14460632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 181 - 403
Target Start/End: Complemental strand, 8354849 - 8354627
Alignment:
Q  181 tattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaag 280  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354849 tattttatcatgtgattgatagacaacttcaagagcttaataatcgattcatcgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaag 8354750  T
Q  281 agattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaa 380  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  8354749 agattcattttttgcctttgacaaggagaagttggttaatttggctcgattttatccataagaattttcttctttggagcttacgggaatagacaatcaa 8354650  T
Q  381 cttgaaaattatatcaaggatgt 403  Q
    |||||||||||||||||||||||    
T  8354649 cttgaaaattatatcaaggatgt 8354627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 61 - 396
Target Start/End: Original strand, 12817827 - 12818165
Alignment:
Q  61 cattgttttgtgagaagcaaaatattgacattgtaaatatggatgatgcattcgtgttacaaggaaaaccaaggcgtaaacttcaaaaggtttcaaactt 160  Q
    ||||||||||||||||| |  |||||||||||| |||| |||| ||| ||||  ||||| ||||||||||||||||||||||| |||| |||| ||||||    
T  12817827 cattgttttgtgagaagaattatattgacattgcaaatttggaggatacatttatgttataaggaaaaccaaggcgtaaacttgaaaaagttttaaactt 12817926  T
Q  161 gcatcactttcaagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgt 260  Q
    ||| |||||||||| ||||||||||| | | ||||| |||||  ||||||||||| |||||||  |||| || || | ||||||||||||| ||||||||    
T  12817927 gcaccactttcaagctgaggtattttgttaggtgattgataggaaacttcaagagtttaataacagatttacagaagagagtagtgaattgattatttgt 12818026  T
Q  261 gtagcaagcttaaatccaagagat---tcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttgg 357  Q
    ||||||||||||||||||| ||||   |||||||||||||||  ||| || |||||| |||||||||||| ||||||||| || |||||||||||  |||    
T  12818027 gtagcaagcttaaatccaatagattgatcattttttgcattttgcaaagaaaagttgattaatttggctccattttatccctctgaattttcttcaatgg 12818126  T
Q  358 agcttacgggaataggcaatcaacttgaaaattatatca 396  Q
    |||||| |||  | | |||||||||||| ||||||||||    
T  12818127 agcttatggggcttgacaatcaacttgagaattatatca 12818165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 350
Target Start/End: Original strand, 22972431 - 22972631
Alignment:
Q  150 gtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaat 249  Q
    ||||| ||||| ||| ||||||||||| |  | || ||||| ||||| ||| |||||||||||||| | |||||||| ||  | || |||| || ||| |    
T  22972431 gtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcagaagtgaatactgagt 22972530  T
Q  250 tgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttc 349  Q
    ||||| ||||||||||  | ||||| |||||||||   |||| ||||||||| ||| |||| ||| ||  ||| |||  ||||||||| |||||||||||    
T  22972531 tgcttctttgtgtagcttgtttaaacccaagagatagcttttctgcatttgataagaagaatttgattcgtttagctgaattttatccttcagaattttc 22972630  T
Q  350 t 350  Q
    |    
T  22972631 t 22972631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 348
Target Start/End: Original strand, 22964187 - 22964385
Alignment:
Q  150 gtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaat 249  Q
    ||||| ||||| ||| ||||||||||| |  | || ||||| ||||| ||| |||||||||||||| | |||||||| ||  | || |||| || ||| |    
T  22964187 gtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcagaagtgaatactgagt 22964286  T
Q  250 tgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaatttt 348  Q
    ||||| ||||||||||  | ||||| |||||||||   |||| ||||||||| ||| |||| ||| ||  ||| |||  ||||||||| ||||||||||    
T  22964287 tgcttctttgtgtagcctgtttaaacccaagagatagcttttctgcatttgataagaagaatttgattcgtttagctaaattttatccttcagaatttt 22964385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 18548598 - 18548462
Alignment:
Q  1 caaaggatagattacaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18548598 caaaggatagattgcaaaagatgagagaagatggctggcataatttactatgtgaagtgtcattgttttgtgagaagcaaaatattgacattgtaaatat 18548499  T
Q  101 ggatgatgcattcgtgttacaaggaaaaccaaggcgt 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  18548498 ggatgatgcattcgtgttacaaggaaaaccaaggcgt 18548462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 18548463 - 18548375
Alignment:
Q  315 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaaggatgt 403  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  18548463 gttaatttggctcgattttatccgtcagaattttcttctttggagcttacgggaataggcaattaacttgaaaattatatcatggatgt 18548375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 18168841 - 18169010
Alignment:
Q  172 aagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagctt 271  Q
    ||||| |||||||||| || ||||| || | ||| |||||||| |||||||||  ||  |  ||||||||||||||||||||||||||||||| | | ||    
T  18168841 aagttaaggtattttaccaagtgattgacacacaccttcaagaacttaataataaatctatagaggtgagtagtgaattgcttatttgtgtagaaggttt 18168940  T
Q  272 aaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatca 341  Q
    | |||||| |||||   ||||||||||||| | |||||||||  ||| ||| ||| ||||||||||||||    
T  18168941 acatccaaaagatttcatttttgcatttgatagggagaagtttattagtttagcttgattttatccatca 18169010  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 19144241 - 19144143
Alignment:
Q  264 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 363  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||| |||| |||||||||||||  | |||||||||||  |||||||||    
T  19144241 gcaagtttaaatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactcgattttatcccactgaattttcttcaatggagctta 19144143  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 19101564 - 19101662
Alignment:
Q  264 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 363  Q
    ||||| ||| ||||||| |||||||||||||||||| | |||||||||||  ||| |||| |||||||||||||  | |||||||||||  |||||||||    
T  19101564 gcaagtttatatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactcgattttatcccactgaattttcttcaatggagctta 19101662  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 31827676 - 31827626
Alignment:
Q  63 ttgttttgtgagaagcaaaatattgacattgtaaatatggatgatgcattc 113  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31827676 ttgttttgtgagaagcaaaatattgtcattgtaaatatgtatgatgcattc 31827626  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 350
Target Start/End: Complemental strand, 12586226 - 12586026
Alignment:
Q  150 gtttcaaacttgcatcactttcaagttgaggtattttatcatgtgatcgatagacaacttcaagagcttaataatcgattcaccgaggtgagtagtgaat 249  Q
    ||||| ||||| ||| ||||||||||| |  | || ||||| ||||| ||| |||||||||||||| | |||||||  ||  | || |||| || ||| |    
T  12586226 gtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcatttttcagaagtgaatactgagt 12586127  T
Q  250 tgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttc 349  Q
    ||||| ||||||||||  | ||||| |||||||||   |||| ||||||||| ||| |||| ||| ||  ||| |||  ||||||||| |||||||||||    
T  12586126 tgcttctttgtgtagcttgtttaaacccaagagatagtttttctgcatttgataagaagaatttgattcgtttagctgaattttatccttcagaattttc 12586027  T
Q  350 t 350  Q
    |    
T  12586026 t 12586026  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 360
Target Start/End: Original strand, 11405289 - 11405414
Alignment:
Q  234 gaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgatttt 333  Q
    ||||||| | ||||| ||| ||||||  ||||||| ||||||  |||||||||| ||| | ||||| | |||||||||||| | ||||| ||| ||||||    
T  11405289 gaggtgatttgtgaaatgcatatttgcatagcaagtttaaatttaagagattcagtttctacatttaataaggagaagttgatcaatttagcttgatttt 11405388  T
Q  334 atccatcagaattttcttctttggagc 360  Q
     || | || ||||||||||||||||||    
T  11405389 ttcga-cataattttcttctttggagc 11405414  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 17354733 - 17354778
Alignment:
Q  306 gagaagttggttaatttggctcgattttatccatcagaattttctt 351  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||||    
T  17354733 gagaagttgatcaatttggctccattttatccatcacaattttctt 17354778  T

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