View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3665_low_5 (Length: 314)

Name: NF3665_low_5
Description: NF3665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3665_low_5
NF3665_low_5
[»] chr1 (62 HSPs)
chr1 (1-296)||(11891911-11892206)
chr1 (1-284)||(11905522-11905805)
chr1 (1-222)||(11882725-11882946)
chr1 (1-171)||(52818440-52818610)
chr1 (1-148)||(11880176-11880323)
chr1 (1-148)||(11902676-11902823)
chr1 (1-154)||(11902580-11902733)
chr1 (92-148)||(11905325-11905381)
chr1 (1-148)||(11880080-11880227)
chr1 (92-154)||(11882384-11882446)
chr1 (1-154)||(11882485-11882638)
chr1 (92-154)||(11891618-11891680)
chr1 (1-154)||(11891719-11891872)
chr1 (92-154)||(52818601-52818663)
chr1 (94-154)||(11905279-11905339)
chr1 (2-154)||(11905331-11905483)
chr1 (2-148)||(11879841-11879987)
chr1 (98-148)||(11888193-11888243)
chr1 (98-148)||(11888241-11888291)
chr1 (98-148)||(11888289-11888339)
chr1 (98-148)||(11888337-11888387)
chr1 (98-148)||(11888385-11888435)
chr1 (98-148)||(11888433-11888483)
chr1 (98-148)||(11888481-11888531)
chr1 (98-148)||(11888529-11888579)
chr1 (98-148)||(11888577-11888627)
chr1 (98-148)||(11888625-11888675)
chr1 (98-148)||(11888673-11888723)
chr1 (98-148)||(11888721-11888771)
chr1 (98-148)||(11888769-11888819)
chr1 (98-148)||(11888817-11888867)
chr1 (98-148)||(11888865-11888915)
chr1 (98-148)||(11888913-11888963)
chr1 (98-148)||(11888961-11889011)
chr1 (98-148)||(11889009-11889059)
chr1 (98-148)||(11889057-11889107)
chr1 (98-148)||(11889105-11889155)
chr1 (98-148)||(11889153-11889203)
chr1 (98-148)||(11889201-11889251)
chr1 (98-148)||(11889249-11889299)
chr1 (98-148)||(11889297-11889347)
chr1 (98-148)||(11889345-11889395)
chr1 (98-148)||(11889393-11889443)
chr1 (98-148)||(11889441-11889491)
chr1 (98-148)||(11889489-11889539)
chr1 (161-231)||(52818287-52818357)
chr1 (2-51)||(11882438-11882487)
chr1 (2-51)||(11891672-11891721)
chr1 (2-154)||(11882342-11882494)
chr1 (92-148)||(11882480-11882536)
chr1 (2-154)||(11891576-11891728)
chr1 (92-148)||(11891714-11891770)
chr1 (92-148)||(52818799-52818855)
chr1 (2-57)||(52818842-52818897)
chr1 (92-154)||(11882336-11882398)
chr1 (92-154)||(11891570-11891632)
chr1 (92-154)||(11905469-11905531)
chr1 (98-144)||(52818851-52818897)
chr1 (95-148)||(11889630-11889683)
chr1 (98-138)||(11889537-11889577)
chr1 (98-154)||(11889777-11889833)
chr1 (2-42)||(52819097-52819137)
[»] chr4 (1 HSPs)
chr4 (8-52)||(24482211-24482255)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 62)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 11891911 - 11892206
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  11891911 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctcccaac 11892010  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892011 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttaca 11892110  T
Q  201 tctatgcttctccaccaccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattgttgcaatcat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11892111 tctatgcttctccaccaccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattattgcaatcat 11892206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 11905522 - 11905805
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11905522 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctac 11905621  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttaca 200  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||     
T  11905622 tactacaaatcccctccaccaccgtctccatctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagtttacg 11905721  T
Q  201 tctatgcttctccaccaccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccat 284  Q
    | |||||||||||||||||||| |||||| | ||  |||  ||||||||| |||||||| |||||||| |||||||||||||||    
T  11905722 tttatgcttctccaccaccacccatctaccattaatctcggaacaccaaagcaccattgatgataaatcatgtaagtttaccat 11905805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11882725 - 11882946
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11882725 ttactattacaaatctcccccacctccatctccatctccaccacctccttaccactatcaaagtcctcctccaccatctcccatttctcatcctccctac 11882824  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttaca 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||| |    
T  11882825 tactacaaatcccctccaccaccatcgccgtctcctccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaacttata 11882924  T
Q  201 tctatgcttctccaccaccacc 222  Q
    |||||||||| |||||||||||    
T  11882925 tctatgcttcaccaccaccacc 11882946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 52818610 - 52818440
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  52818610 ttactattacaagtcacctccacctccatctccatctccaccacctccttattactatcaaagtcctcctccaccatctcccactcctcatactccctac 52818511  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccacc 171  Q
     ||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||    
T  52818510 cactacaaatcccctccaccaccaacggcgtctcctccacctccttaccattatgtgagtccccccccacc 52818440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11880176 - 11880323
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||||||||||||||| || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||||| | | | || |||    
T  11880176 ttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccgtacaccttac 11880275  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    || |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880276 tattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11902676 - 11902823
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||||||||||||||| || || |||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||||| | | | || |||    
T  11902676 ttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccgtacaccttac 11902775  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    || |||||||| || |||||||| || |||||||||||||| ||||||    
T  11902776 tattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11902823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 11902580 - 11902733
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||| ||||| ||||| || || |||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||||| ||| | || |||    
T  11902580 ttactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccatacaccttac 11902679  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    || |||||||| || |||||||| || |||||||||||||| |||||| |||||    
T  11902680 tattacaaatctcccccaccaccttcaccatctcctccaccaccatactattac 11902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 11905325 - 11905381
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||    
T  11905325 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatac 11905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11880080 - 11880227
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctac 100  Q
    |||||||||||| ||||| || || || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||||| ||| | || |||    
T  11880080 ttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccatacaccttac 11880179  T
Q  101 tactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    || |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880180 tattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 11882384 - 11882446
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11882384 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 11882485 - 11882638
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcct-catcctcccta 99  Q
    ||||||||||||||| || ||||| ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   |||| ||||| || ||    
T  11882485 ttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc-ccata 11882583  T
Q  100 ctactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
     ||||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11882584 ttactacaaatctccaccaccaccatcaccatccccaccccctccctactattac 11882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 11891618 - 11891680
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11891618 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11891680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 11891719 - 11891872
Alignment:
Q  1 ttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcct-catcctcccta 99  Q
    ||||||||||||||| || ||||| ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   |||| ||||| || ||    
T  11891719 ttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc-ccata 11891817  T
Q  100 ctactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
     ||||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11891818 ttactacaaatctccaccaccaccatcaccatccccaccccctccctactattac 11891872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 52818663 - 52818601
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||||    
T  52818663 cctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattac 52818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 11905279 - 11905339
Alignment:
Q  94 tccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||||||| |||||||| |||||||||||||||||||| || |||||||| ||| |||||    
T  11905279 tccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattac 11905339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 11905331 - 11905483
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctact 101  Q
    |||||||||||||| || ||||| ||||| ||||| || |||||||| ||  ||||  |||| || ||||| || ||||||  ||||| ||| || || |    
T  11905331 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaagcccccctccaccttctccctctcctcctcccccatatt 11905430  T
Q  102 actacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    |||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11905431 actacaaatctccaccaccaccatcaccatcaccaccccctccctactattac 11905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 11879841 - 11879987
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctact 101  Q
    ||||| ||||||||||||||||| || || || ||||| ||||| || ||  ||||  ||  ||||||||| |||||||| |||||  |  | || ||||    
T  11879841 tactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactacaaatctcctcctcctccatctcctattcccaaaacaccttact 11879940  T
Q  102 actacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    |||||||||| || ||||| || || |||||||||||||| ||||||    
T  11879941 actacaaatctcccccacccccttcaccatctcctccaccaccatac 11879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888193 - 11888243
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888193 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888241 - 11888291
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888241 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888289 - 11888339
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888289 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888337 - 11888387
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888337 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888385 - 11888435
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888385 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888433 - 11888483
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888433 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888481 - 11888531
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888481 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888529 - 11888579
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888529 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888577 - 11888627
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888577 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888625 - 11888675
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888625 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888673 - 11888723
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888673 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888721 - 11888771
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888721 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888769 - 11888819
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888769 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888817 - 11888867
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888817 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888865 - 11888915
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888865 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888913 - 11888963
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888913 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11888961 - 11889011
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888961 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889009 - 11889059
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889009 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889057 - 11889107
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889057 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889105 - 11889155
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889105 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889153 - 11889203
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889153 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889201 - 11889251
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889201 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889249 - 11889299
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889249 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889297 - 11889347
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889297 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889345 - 11889395
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889345 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889393 - 11889443
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889393 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889441 - 11889491
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889441 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 11889489 - 11889539
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889489 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 52818357 - 52818287
Alignment:
Q  161 cctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccaccaccaccaatctacaa 231  Q
    |||||||||||| | || |||||||| || |||| |||||| |||||||| ||||||||||| ||||||||    
T  52818357 cctcccccaccaatgaaatcacctcctccgccagtttacatttatgcttccccaccaccacctatctacaa 52818287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11882438 - 11882487
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctcctta 51  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11882438 tactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11882487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11891672 - 11891721
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctcctta 51  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11891672 tactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11891721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 11882342 - 11882494
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctact 101  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||  | ||  ||   ||||| || ||||| ||    ||||  ||||| ||||    
T  11882342 tactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatact 11882441  T
Q  102 actacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    | |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882442 attacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 11882480 - 11882536
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||    
T  11882480 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatac 11882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 11891576 - 11891728
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccattcctcatcctccctact 101  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||  | ||  ||   ||||| || ||||| ||    ||||  ||||| ||||    
T  11891576 tactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatact 11891675  T
Q  102 actacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    | |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891676 attacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11891728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 11891714 - 11891770
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||    
T  11891714 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatac 11891770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 52818855 - 52818799
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||    
T  52818855 cctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatac 52818799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 52818897 - 52818842
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccaccacctccttatcacta 57  Q
    ||||||||| |||| || ||||| ||||| ||||||||||||||||||||| ||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctccttattacta 52818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 11882336 - 11882398
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 11891570 - 11891632
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 11905469 - 11905531
Alignment:
Q  92 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||||||||| |||||||| ||||||||||| || ||||| || |||||||| ||| |||||    
T  11905469 cctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattac 11905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 52818897 - 52818851
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctcc 144  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctcc 52818851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 11889630 - 11889683
Alignment:
Q  95 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 148  Q
    ||||||||||| ||||| || |||||||| || |||||||||||||| ||||||    
T  11889630 ccctactactataaatcacccccaccaccttcaccatctcctccaccaccatac 11889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 11889537 - 11889577
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctcc 138  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  11889537 tactactacaaatccccacctccaccatcgccttctcctcc 11889577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 11889777 - 11889833
Alignment:
Q  98 tactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 154  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| |||||| |||||    
T  11889777 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattac 11889833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 52819137 - 52819097
Alignment:
Q  2 tactattacaaatctcccccacctccatctccatctccacc 42  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  52819137 tactattacaaatctcccccaccgccatcaccatccccacc 52819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24482255 - 24482211
Alignment:
Q  8 tacaaatctcccccacctccatctccatctccaccacctccttat 52  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttat 24482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University