View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3665_low_6 (Length: 312)

Name: NF3665_low_6
Description: NF3665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3665_low_6
NF3665_low_6
[»] chr5 (4 HSPs)
chr5 (149-300)||(41549942-41550093)
chr5 (5-90)||(41549798-41549883)
chr5 (154-219)||(14025077-14025142)
chr5 (153-219)||(239870-239936)
[»] chr8 (6 HSPs)
chr8 (153-284)||(29514969-29515100)
chr8 (149-271)||(24785305-24785427)
chr8 (149-271)||(35195565-35195687)
chr8 (153-243)||(20669988-20670078)
chr8 (153-219)||(33373340-33373406)
chr8 (149-183)||(44145977-44146011)
[»] chr1 (14 HSPs)
chr1 (156-264)||(30902084-30902192)
chr1 (149-271)||(8054915-8055037)
chr1 (149-271)||(28705468-28705590)
chr1 (149-271)||(46018959-46019081)
chr1 (149-271)||(49572595-49572717)
chr1 (177-271)||(7798020-7798114)
chr1 (177-271)||(33695738-33695832)
chr1 (149-271)||(46077488-46077610)
chr1 (172-300)||(37752693-37752821)
chr1 (172-271)||(9886200-9886299)
chr1 (153-219)||(6294158-6294224)
chr1 (153-219)||(38168237-38168303)
chr1 (157-222)||(5321798-5321863)
chr1 (177-217)||(43466898-43466938)
[»] chr4 (5 HSPs)
chr4 (149-271)||(30970873-30970995)
chr4 (177-271)||(54908131-54908226)
chr4 (153-222)||(24246295-24246364)
chr4 (153-219)||(1217301-1217367)
chr4 (153-217)||(28945267-28945331)
[»] chr3 (2 HSPs)
chr3 (153-271)||(44938195-44938313)
chr3 (177-249)||(34544079-34544151)
[»] scaffold0702 (1 HSPs)
scaffold0702 (149-271)||(7480-7602)
[»] chr7 (4 HSPs)
chr7 (149-271)||(6792552-6792674)
chr7 (149-271)||(6205559-6205681)
chr7 (150-184)||(8035888-8035922)
chr7 (153-219)||(46046049-46046115)
[»] scaffold0012 (1 HSPs)
scaffold0012 (149-251)||(107059-107161)
[»] chr2 (3 HSPs)
chr2 (163-285)||(218360-218488)
chr2 (149-283)||(17290202-17290336)
chr2 (153-219)||(42866059-42866125)
[»] chr6 (3 HSPs)
chr6 (188-285)||(6262265-6262362)
chr6 (153-271)||(20679035-20679156)
chr6 (198-243)||(26208735-26208780)
[»] scaffold0536 (1 HSPs)
scaffold0536 (149-256)||(2428-2535)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 149 - 300
Target Start/End: Original strand, 41549942 - 41550093
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41549942 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 41550041  T
Q  249 agactgaaattagcaagccaatcggtacttttattgctctctctccaagtat 300  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41550042 aggctgaaattagcaagccaatcggtacttttattgctctctcgccaagtat 41550093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 41549798 - 41549883
Alignment:
Q  5 catattttattataagtaaatgagctaaatttgtttataccttgttatccggtagctgagaatttacttatgtacttgtattatca 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41549798 catattttattataagtaaatgagctaaatttgtttataccttgttatccggtagctgagaatttacttatgtacttgtattatca 41549883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 14025142 - 14025077
Alignment:
Q  154 taggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    ||||||||||||||||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  14025142 taggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 14025077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 239870 - 239936
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||| ||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  239870 ctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 239936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 284
Target Start/End: Original strand, 29514969 - 29515100
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagac 252  Q
    ||||||||||| | |||  ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |    
T  29514969 ctaggcatgcaggtcccataaatatcatcaaagaggagactattgagctcattagaaggggtctccaaaacaacaaaatcccaagaatccatggtaaggc 29515068  T
Q  253 tgaaattagcaagccaatcggtacttttattg 284  Q
    || |||||||||||||||| | ||||||||||    
T  29515069 tggaattagcaagccaatcagcacttttattg 29515100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 24785427 - 24785305
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  24785427 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 24785328  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  24785327 aggctgaagttggcaagccaatc 24785305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 35195565 - 35195687
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  35195565 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 35195664  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  35195665 aggctgaagttggcaagccaatc 35195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 20669988 - 20670078
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatcca 243  Q
    |||||||||||||||||  ||||||||||| | | ||| || | ||| |||||||| || | ||||||||| || |||| |||||||||||    
T  20669988 ctaggcatgcaagccccagaaatatcatcataaatgagtctttatagttcactaggtggagactccaaaactaccaaattccaagaatcca 20670078  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 33373406 - 33373340
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||| ||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  33373406 ctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 33373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 44146011 - 44145977
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaa 183  Q
    |||| ||||||||||||||||||||||||||||||    
T  44146011 atttttaggcatgcaagccccgaaaatatcatcaa 44145977  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 30902192 - 30902084
Alignment:
Q  156 ggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactga 255  Q
    |||||||||| |||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  30902192 ggcatgcaagtcccgaaaatatcatcagataggagactattgagctctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctga 30902093  T
Q  256 aattagcaa 264  Q
    |||||||||    
T  30902092 aattagcaa 30902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 8054915 - 8055037
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  8054915 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 8055014  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  8055015 aggctgaagttggcaagccaatc 8055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 28705590 - 28705468
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  28705590 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 28705491  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  28705490 aggctgaagttggcaagccaatc 28705468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 46018959 - 46019081
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  46018959 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 46019058  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  46019059 aggctgaagttggcaagccaatc 46019081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 49572595 - 49572717
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  49572595 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 49572694  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  49572695 aggctgaagttggcaagccaatc 49572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 7798114 - 7798020
Alignment:
Q  177 tcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaaattagcaagccaatc 271  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| |||||| ||||| || |||||||||||    
T  7798114 tcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatc 7798020  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 33695738 - 33695832
Alignment:
Q  177 tcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaaattagcaagccaatc 271  Q
    |||||||||||||||||||| |||||| || ||||||||||||||| |  ||||| ||| ||||||| |||||| ||||| || |||||||||||    
T  33695738 tcatcaaagaggagactattgagctcattatgaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatc 33695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 46077610 - 46077488
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||| |||||||| |||||| |||||| |||||||||||||||||| |  ||||| | | ||||||| ||||    
T  46077610 atttctaggcatacaagctccagagatgtcattaaagaggaaactattgagctcattaggaggggtctccaaaatagtaaaattctatgaatccatggta 46077511  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  46077510 aggctgaagttggcaagccaatc 46077488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 37752821 - 37752693
Alignment:
Q  172 aaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaaattagcaagccaatc 271  Q
    |||||||||| ||||||| ||| || |||| ||| | |||| |||||||||||| ||||| |||||||||   |||||||||||||  |||||| |||||    
T  37752821 aaatatcatcgaagaggaaactgttgagctgactcgaagggatctccaaaacaataaaattccaagaatctgtggtaagactgaaaccagcaagtcaatc 37752722  T
Q  272 ggtacttttattgctctctctccaagtat 300  Q
       |||||| ||||| |||| ||||||||    
T  37752721 aacacttttgttgctttctcgccaagtat 37752693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 9886200 - 9886299
Alignment:
Q  172 aaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaaattagcaagccaatc 271  Q
    ||||||||||||||||  ||||||| | | || || |||| ||||||||||||| ||||| ||||||||  | ||||||  ||||||||||||| |||||    
T  9886200 aaatatcatcaaagagacgactattaatcccattacgaggtgtctccaaaacaataaaattccaagaatttatggtaaggttgaaattagcaagtcaatc 9886299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 6294224 - 6294158
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||||||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  6294224 ctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 6294158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 38168237 - 38168303
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||||||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  38168237 ctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 38168303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 5321863 - 5321798
Alignment:
Q  157 gcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaa 222  Q
    |||||||| || | ||||||||||||||||  ||| || |||||||||| ||||||||||||||||    
T  5321863 gcatgcaaacctcaaaaatatcatcaaagaatagattaattagctcactgggaggggtctccaaaa 5321798  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 43466898 - 43466938
Alignment:
Q  177 tcatcaaagaggagactatttagctcactaggaggggtctc 217  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  43466898 tcatcaaagaggagactattgagctcattaggaggggtctc 43466938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 30970995 - 30970873
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  30970995 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 30970896  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| ||||||||||||||    
T  30970895 aggctgaagttagcaagccaatc 30970873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 54908131 - 54908226
Alignment:
Q  177 tcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggt-aagactgaaattagcaagccaatc 271  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||| ||| ||||| || |||||||||||    
T  54908131 tcatcaaagaagagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaaggctgaagttggcaagccaatc 54908226  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 24246295 - 24246364
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaa 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||  || ||  |||||||||||    
T  24246295 ctagacatgcaagccccgaaaatatcatcaaagaggagactattgagctcgttaagaaaggtctccaaaa 24246364  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 1217367 - 1217301
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||||||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  1217367 ctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 1217301  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 28945267 - 28945331
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctc 217  Q
    ||||||||| ||| |||||||||||||||||| |  ||||| |  |||||||||||||| |||||    
T  28945267 ctaggcatgtaagtcccgaaaatatcatcaaacaaaagactttgaagctcactaggaggagtctc 28945331  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 44938313 - 44938195
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagac 252  Q
    |||| |||||||| |||| |||||||||||||  |||||||||| ||||| |||||| |||||| |||||||||||||| ||||||||||| ||||||      
T  44938313 ctagacatgcaagtcccggaaatatcatcaaaagggagactattaagctctctaggaagggtctacaaaacaacaaaattccaagaatccatggtaaggt 44938214  T
Q  253 tgaaattagcaagccaatc 271  Q
    ||||||||||||| |||||    
T  44938213 tgaaattagcaagtcaatc 44938195  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 34544151 - 34544079
Alignment:
Q  177 tcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaa 249  Q
    ||||||||||||| | |||| |||||||||| || ||| ||||||| || ||||| ||||||||||| |||||    
T  34544151 tcatcaaagaggatattattgagctcactagaagaggtatccaaaagaataaaattccaagaatccatggtaa 34544079  T

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Target: scaffold0702 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 7480 - 7602
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  7480 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 7579  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  7580 aggctgaagttggcaagccaatc 7602  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 6792552 - 6792674
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  6792552 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 6792651  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || ||||| || |||||||||||    
T  6792652 aggctgaagttggcaagccaatc 6792674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 6205681 - 6205559
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  6205681 atttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 6205582  T
Q  249 agactgaaattagcaagccaatc 271  Q
    || || || || |||||||||||    
T  6205581 aggctaaagttggcaagccaatc 6205559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 8035922 - 8035888
Alignment:
Q  150 tttctaggcatgcaagccccgaaaatatcatcaaa 184  Q
    ||||||||||||||||||||| |||||||||||||    
T  8035922 tttctaggcatgcaagccccggaaatatcatcaaa 8035888  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 46046115 - 46046049
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||| ||||||||||||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  46046115 ctagacatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 46046049  T

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Target: scaffold0012 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 107059 - 107161
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||| ||||||| ||||    
T  107059 atttctaggcatacaagctccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggta 107158  T
Q  249 aga 251  Q
    |||    
T  107159 aga 107161  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 218360 - 218488
Alignment:
Q  163 aagccccgaaaatatcatcaaagaggagactatttagctcactagga------ggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaa 256  Q
    |||| ||||||| |||||||||||||||| |||| ||||||||| ||      ||||||| |||||||||||||||||||||||    |||||| |||||    
T  218360 aagctccgaaaacatcatcaaagaggagattattgagctcactatgattatgaggggtcttcaaaacaacaaaatcccaagaatatgtggtaaggctgaa 218459  T
Q  257 attagcaagccaatcggtacttttattgc 285  Q
    ||||||||||||||| | |||| ||||||    
T  218460 attagcaagccaatcagcacttctattgc 218488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 17290336 - 17290202
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||||||||||||| ||||||||||||| | |||  |    |||||| ||||||| |||||||||| ||  |||| | ||  || ||| | |    
T  17290336 atttctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaa 17290237  T
Q  249 agactgaaattagcaagccaatcggtacttttatt 283  Q
    | ||| ||||||||||||||||||| |||| ||||    
T  17290236 atactaaaattagcaagccaatcggcacttctatt 17290202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 42866125 - 42866059
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcca 219  Q
    |||||||||||||| ||| ||||||||||||| |  ||||| |  |||||||||||||| |||||||    
T  42866125 ctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcca 42866059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 6262362 - 6262265
Alignment:
Q  188 gagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaagactgaaattagcaagccaatcggtacttttattgc 285  Q
    |||||| ||| |||||||||||||| ||| |||||||||||||| |||| ||| ||| ||||| ||||||||| |||| ||||| | |||| ||||||    
T  6262362 gagactcttttgctcactaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgc 6262265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 20679035 - 20679156
Alignment:
Q  153 ctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctcc-------aaaacaacaaaatcccaagaatccacg 245  Q
    |||||||||||||||||| ||||||||||||| |||||||    | |   ||||||||||||||||       ||||||| ||||  | ||||||||| |    
T  20679035 ctaggcatgcaagccccggaaatatcatcaaataggagac----tggtatactaggaggggtctccaaaacaaaaaacaaaaaaaatcgaagaatccatg 20679130  T
Q  246 gtaagactgaaattagcaagccaatc 271  Q
    |||||| |||||||||||||||||||    
T  20679131 gtaagattgaaattagcaagccaatc 20679156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 26208780 - 26208735
Alignment:
Q  198 agctcactaggaggggtctccaaaacaacaaaatcccaagaatcca 243  Q
    |||||||||||||| |||||||||||||  |||| |||||||||||    
T  26208780 agctcactaggaggagtctccaaaacaagcaaattccaagaatcca 26208735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 2535 - 2428
Alignment:
Q  149 atttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggta 248  Q
    |||||||||||| ||||| ||  | || |||| ||||| ||||||||| |||||||||| |||||||||||||| |  ||||| ||| ||||||| ||||    
T  2535 atttctaggcatacaagcaccagagatgtcattaaagatgagactattgagctcactagaaggggtctccaaaatagtaaaattccatgaatccatggta 2436  T
Q  249 agactgaa 256  Q
    || |||||    
T  2435 aggctgaa 2428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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