View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3665_low_7 (Length: 291)
Name: NF3665_low_7
Description: NF3665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3665_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 28731798 - 28731551
Alignment:
| Q |
8 |
catcatcactcccttcatttcacactcgaattcactctcttgagacttgaaatcttcttcactgtcatggaaaactattcaacctttttctctctgcgat |
107 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
28731798 |
catcatcattccattcatttcacactcgaattcactctcttgagacttgaaatcttcttcaccgccatggaaaactcttcaaccttttcctctctgcgat |
28731699 |
T |
|
| Q |
108 |
tctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731698 |
tctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgttgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctcc |
28731599 |
T |
|
| Q |
208 |
acatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731598 |
acatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
28731551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 38122219 - 38121977
Alignment:
| Q |
21 |
ttcatttcacactcgaattcactctcttgagacttgaaa--------tcttcttcactgtcatggaaaactattcaacctttttctctctgcgattctcg |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
38122219 |
ttcaattcacactcgaattcactctcttgagacttgaaacctctgaatcttcttaaccaccatggaaaactcttcaaccttttcctctatgcgattctct |
38122120 |
T |
|
| Q |
113 |
atgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccacatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
38122119 |
atgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccgcacg |
38122020 |
T |
|
| Q |
213 |
atcttcaagaacattcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38122019 |
atcttcaagaacattcgttcttctctcaaactgcattacttcc |
38121977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 38607967 - 38608146
Alignment:
| Q |
73 |
catggaaaactattcaacctttttctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
172 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
38607967 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38608063 |
T |
|
| Q |
173 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38608064 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38608146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 38792750 - 38792929
Alignment:
| Q |
73 |
catggaaaactattcaacctttttctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
172 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
38792750 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38792846 |
T |
|
| Q |
173 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38792847 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38792929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 31529533 - 31529505
Alignment:
| Q |
227 |
tcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31529533 |
tcgttcttctctcacactgcattacttcc |
31529505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 51801601 - 51801573
Alignment:
| Q |
227 |
tcgttcttctctcacactgcattacttcc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51801601 |
tcgttcttctctcacactgcattacttcc |
51801573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University