View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3665_low_8 (Length: 259)
Name: NF3665_low_8
Description: NF3665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3665_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 38626279 - 38626511
Alignment:
| Q |
12 |
atgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatca |
111 |
Q |
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| T |
38626279 |
atgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatca |
38626378 |
T |
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| Q |
112 |
acaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgcc |
211 |
Q |
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| T |
38626379 |
acaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgcc |
38626478 |
T |
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| Q |
212 |
aatactttgattgccttaataatcccatcaaat |
244 |
Q |
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| T |
38626479 |
aatactttgattgccctaataatcccatcaaat |
38626511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 34622578 - 34622376
Alignment:
| Q |
13 |
tgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatcaa |
112 |
Q |
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||||| ||||||||| ||||||||| || | ||| ||||| |||||||| ||||| || ||||||||||| | || || ||||| ||||||||||| | |
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| T |
34622578 |
tgaggttcatcatctgtataagaatccacaacatgaacatacggggacaccacatctttattcaaattagacatgcccttagggtagcggccaaaatcca |
34622479 |
T |
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| Q |
113 |
caacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgcca |
212 |
Q |
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| T |
34622478 |
caacaacttgaatagtatcattcaattgattacgtaggaatctaaaggcattggggtgtgtcataggaaatacatggtctctgcctttagacctctgcca |
34622379 |
T |
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| Q |
213 |
ata |
215 |
Q |
| |
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||| |
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| T |
34622378 |
ata |
34622376 |
T |
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