View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3666_high_2 (Length: 427)
Name: NF3666_high_2
Description: NF3666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3666_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 4145274 - 4145670
Alignment:
| Q |
21 |
attgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145274 |
attgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaa |
4145373 |
T |
|
| Q |
121 |
ctatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttg |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145374 |
ctatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttg |
4145473 |
T |
|
| Q |
221 |
accaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145474 |
accaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtt |
4145573 |
T |
|
| Q |
321 |
tgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145574 |
tgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 4134472 - 4134868
Alignment:
| Q |
21 |
attgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4134472 |
attgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaa |
4134571 |
T |
|
| Q |
121 |
ctatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttg |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134572 |
ctatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttg |
4134671 |
T |
|
| Q |
221 |
accaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtt |
320 |
Q |
| |
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||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134672 |
accaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtt |
4134771 |
T |
|
| Q |
321 |
tgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4134772 |
tgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 25 - 409
Target Start/End: Original strand, 4123931 - 4124315
Alignment:
| Q |
25 |
tcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactat |
124 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||| |
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| T |
4123931 |
tcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactat |
4124030 |
T |
|
| Q |
125 |
cccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgacca |
224 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4124031 |
cccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgacca |
4124130 |
T |
|
| Q |
225 |
aatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgca |
324 |
Q |
| |
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|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4124131 |
tataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttgatctctgtttgca |
4124230 |
T |
|
| Q |
325 |
atccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
409 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4124231 |
atccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 409
Target Start/End: Original strand, 4153281 - 4153665
Alignment:
| Q |
25 |
tcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactat |
124 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||| |
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| T |
4153281 |
tcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactat |
4153380 |
T |
|
| Q |
125 |
cccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgacca |
224 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| | ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4153381 |
cccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgacca |
4153480 |
T |
|
| Q |
225 |
aatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgca |
324 |
Q |
| |
|
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4153481 |
tataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgca |
4153580 |
T |
|
| Q |
325 |
atccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
409 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4153581 |
atccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 409
Target Start/End: Original strand, 4163634 - 4164024
Alignment:
| Q |
25 |
tcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactat |
124 |
Q |
| |
|
||||||||||||| |||||||| || | ||| || || |||| |||||||||||| |||||| ||||||||| | ||| | |||||| |||||||||| |
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|
| T |
4163634 |
tcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactat |
4163733 |
T |
|
| Q |
125 |
cccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgt |
218 |
Q |
| |
|
|||| ||||||| || |||||||||||| |||||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || ||||||| |||| |
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| T |
4163734 |
cccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgt |
4163833 |
T |
|
| Q |
219 |
tgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctg |
318 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
4163834 |
tgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtggttgatctctg |
4163933 |
T |
|
| Q |
319 |
tttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
409 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4163934 |
tttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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