View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3666_low_1 (Length: 531)
Name: NF3666_low_1
Description: NF3666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3666_low_1 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold1868 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0850 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 2870573 - 2870953
Alignment:
| Q |
11 |
cacagacaggggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtc |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2870573 |
cacagacgggggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtc |
2870672 |
T |
|
| Q |
111 |
tcttaaaccgtcaaggtaaatgaaggtacaccatcccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtga |
210 |
Q |
| |
|
|||| || | |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
2870673 |
tctttaagc--caaggtaaatgacggcacaccatcccttcccgcgtatcagccatcccgagtaagtgttaataagctgaaaagggtgcaccgctcggtga |
2870770 |
T |
|
| Q |
211 |
tcatcatatgtagaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2870771 |
tcatcatatgtagaccacttcatgtcatacacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctcc |
2870870 |
T |
|
| Q |
311 |
ccgcgcatgatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2870871 |
ccgcgcatgatctctccggcttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatctatccctgc |
2870953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 124 - 389
Target Start/End: Original strand, 42096251 - 42096517
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||| ||||| ||||| ||||||||| |||||| |||||| |||||| | ||| ||||||| |||| ||| |
|
|
| T |
42096251 |
aggtaaatgacggtataccatctccttcccgctcatcagtcatcccgagtaagtgacaataagctgaaaatggcgcatctctctgtgatcaccataagta |
42096350 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | |||||||||||||||||||| ||| || |||| |||||||||| | || ||||||||||| ||||||| ||| |||| | |||| || |
|
|
| T |
42096351 |
gaaaacctgacatcatccacctctaagcgatcaagcagtaagcgataatggtgcatatctgtatgccctctgctagtaagtcatttcccaacacatggtc |
42096450 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatcc |
389 |
Q |
| |
|
|||| | |||||| ||| |||| | ||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
42096451 |
tctctggcttccagctcttgtttttcttccttgggtacggacctggcaaatgcttcaaaatccatcc |
42096517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 124 - 335
Target Start/End: Original strand, 23713987 - 23714197
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
||||||| || |||||||| || ||||||||| || || ||||| ||||||||| |||||| |||||| | || | | || ||||| |||||||||| |
|
|
| T |
23713987 |
aggtaaacgacggtacaccctctccttcccgcacataagtcatcccgagtaagtgacaataagctgaaaatgacgtatctct--gtgattatcatatgta |
23714084 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
23714085 |
gaccatctcacatcatccacctctaagcgatccaagagtaggcggtaatggtgcacaactttatgccctctgctagtaagccatctccccgcacatggtc |
23714184 |
T |
|
| Q |
323 |
tctccgacttcca |
335 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
23714185 |
tgtccggcttcca |
23714197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 44116340 - 44116673
Alignment:
| Q |
61 |
agggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaaggtaaatgaaggtacaccatc-ccttcccgcgtatc |
159 |
Q |
| |
|
|||||||||| | |||||| |||| | |||||||||||| ||||| ||||| | ||| |||||||||| |||||||| || |||||||| || |
|
|
| T |
44116340 |
agggacatctgatggatgtctgggaacgtcctgtacaaaggataactgcctctttacccgctcaggtaaatgacggtacaccctctccttcccgaacatg |
44116439 |
T |
|
| Q |
160 |
agccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctctaagcgatccagcc |
259 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||| || |||| || ||||||| |||| ||||| |||| | |||||||||||| ||||||||| | | |
|
|
| T |
44116440 |
agccatcccgagtaagtgcacagaagctgaaatggatgcacgtctatgtgatcaccataagtagaaaacttgacgtcatccacctccaagcgatcctggc |
44116539 |
T |
|
| Q |
260 |
gtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttatgtttctttgggta |
359 |
Q |
| |
|
| ||||||||||||||||| || ||||||||||| |||||||||||||||| | |||| |||||||| |||||| | | ||| | ||| ||||||| |
|
|
| T |
44116540 |
ataagcggtaatggtgcacatctttatgccctctgctagtaagccatctcccaacacatggtctctccggcttccaccccaggtttggcttccttgggta |
44116639 |
T |
|
| Q |
360 |
ctgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| |
|
|
| T |
44116640 |
aggacctggcaaatgctccaaaatccatccctgc |
44116673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 234 - 391
Target Start/End: Original strand, 8317637 - 8317794
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| ||||||||||||||||| || |||| ||| || | |||||||||||||| || |||| |||||||| | || |
|
|
| T |
8317637 |
gtcatccacctccaagtgatccaggcgtaagcggtaatggtgcacatctttatgtcctttgcttgtaagccatctcccagcacatggtctctccggcgtc |
8317736 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccct |
391 |
Q |
| |
|
|| ||| || | ||| |||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
8317737 |
cactccctatttttcttccttgggtacagacctggcaaatgctccaaaatccatccct |
8317794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 2871015 - 2871068
Alignment:
| Q |
462 |
gataacttacttgttgacacagtaaactatcatcaattccaaaggcgtattttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2871015 |
gataacttacttgttgacacagtaaactatcatcaattccaatagcgtattttt |
2871068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 311
Target Start/End: Complemental strand, 41269494 - 41269309
Alignment:
| Q |
127 |
taaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| | ||||||||| |||| |||| ||||||||||| ||||||||| |||||||||||| || |||| ||| ||||||| |||| ||||| |
|
|
| T |
41269494 |
taaatgacgttacaccatctcctttccgcacatcagccatcccgagtaagtgacaataagttgaaataggtgcacgtctctgtgatcaccataagtagaa |
41269395 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccc |
311 |
Q |
| |
|
|| | | |||||||||||| ||||||||||| |||||||| | ||||||||| | |||| ||| || | |||||||||||||| |
|
|
| T |
41269394 |
aacctgacgtcatccacctccaagcgatccaggcgtgagcgaaattggtgcacatatttatgtcctttgcttgtaagccatctccc |
41269309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 393
Target Start/End: Original strand, 20477995 - 20478122
Alignment:
| Q |
266 |
ggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttatgtttctttgggtactgact |
365 |
Q |
| |
|
|||||||||||||| | |||| |||||| |||||||||||||||| | |||| |||||||| | |||| ||| |||| | ||| |||||||| ||| |
|
|
| T |
20477995 |
ggtaatggtgcacatcagtatggcctctgctagtaagccatctcccaacacatggtctctccggcgtccagctcttgtttttcttccttgggtacggacc |
20478094 |
T |
|
| Q |
366 |
tggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||||| || |||||||||||||||| |
|
|
| T |
20478095 |
tggcaaatactccaaaatccatccctgc |
20478122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 13826684 - 13827065
Alignment:
| Q |
11 |
cacagacaggggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtc |
110 |
Q |
| |
|
||||||| ||||||| |||| ||| |||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||| |||| || | |
|
|
| T |
13826684 |
cacagactggggtctatcaatacaatagccaacatctccttaggcatctcagggacatctgacggatgtctggggatgtcctgtataaagccaagctacc |
13826783 |
T |
|
| Q |
111 |
tcttaaaccgtcaaggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtg |
209 |
Q |
| |
|
|||||| || |||||||||| |||||| | || ||||| ||| ||||||||||| ||||||||| |||||| ||||||||| ||| | ||| || |
|
|
| T |
13826784 |
tcttaactcgctcaggtaaatgacggtacatcctctccttctcgcacatcagccatcccgagtaagtgacaataagctgaaaagggtgcatctctctttg |
13826883 |
T |
|
| Q |
210 |
atcatcatatgtagaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctc |
309 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
13826884 |
atcatcatatatagaccacctcacatcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactgtatgccctctggtagcaagccatctc |
13826983 |
T |
|
| Q |
310 |
cccgcgcatgatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccct |
391 |
Q |
| |
|
||||| |||| ||||||||||||||| ||| |||| | ||| |||||||| || | | ||||||| |||||||||||||| |
|
|
| T |
13826984 |
cccgcacatggtctctccgacttccagctcttgtttttcttccttgggtacgaacctagaaaatgctccaaaatccatccct |
13827065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 38110778 - 38110508
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||| |||| |||||| ||||||||| |||||| ||||||||||| | | || |||||| |||| ||| |
|
|
| T |
38110778 |
aggtaaatgacggtacatcatatccttcccgcacatcaaccatcccgagtaagtgacaataagctgaaaagggcgtatctctttgtgatcgccataagta |
38110679 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | |||||| |||||||||||||| ||| || ||||||||||||||||| | |||||||||| |||| ||||||||||| || |||| || |
|
|
| T |
38110678 |
gaaaacctgacgtcatcaacctctaagcgatcaagcagtaagcggtaatggtgcacatttgtatgccctcttctagttagccatctcccagcacatggtc |
38110579 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| || |||||||||||| || | ||| |||||||| ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
38110578 |
tctacggcttccaactcctatttttcttccttgggtacggacctggcaaatgctccaaaattcatccctgc |
38110508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 61 - 393
Target Start/End: Complemental strand, 8888 - 8555
Alignment:
| Q |
61 |
agggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaaggtaaatgaaggtacaccatc-ccttcccgcgtatc |
159 |
Q |
| |
|
|||||||||| | ||||| |||| |||||||||||| | ||| ||| ||||| | ||| |||||||||| |||||||| | |||||| || ||| |
|
|
| T |
8888 |
agggacatctggcagatgtctgggaatgtcctgtacatagacaagctgcctctttacccgctcaggtaaatgacggtacaccctatccttcctgcacatc |
8789 |
T |
|
| Q |
160 |
agccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctctaagcgatccagcc |
259 |
Q |
| |
|
| |||| | ||||||||| | ||| ||||| ||||||||| ||| ||||||| || ||||| || | | ||||||||||||||||||||| ||| |
|
|
| T |
8788 |
acccattccgagtaagtgcacagaagctgaaatgggcgcacctctctgtgatcactgtaggtagaaaacctgacgtcatccacctctaagcgatcaagca |
8689 |
T |
|
| Q |
260 |
gtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttatgtttctttgggta |
359 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||| ||||||||||||||| || |||| ||||||| | |||| |||||||| | || ||||||| |
|
|
| T |
8688 |
ataagcggtaatggtgcacatctgtatgccctctggaagtaagccatctcccagcacatggcctctccggcgtccagctcctgtttttctttcttgggta |
8589 |
T |
|
| Q |
360 |
ctgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
8588 |
cggacctggcaaatgctccaaaatccatccctgc |
8555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 124 - 389
Target Start/End: Original strand, 180801 - 181067
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||| ||||| ||||||||| |||||| ||||||||||| | | ||| || |||| |||| ||| |
|
|
| T |
180801 |
aggtaaatgacggtacaccctctccttcccgcacatcagtcatcccgagtaagtgacaataagctgaaaagggcgtatccctctgttatcaccataagta |
180900 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| | | | ||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||| || |||||||||||||| || |||| || |
|
|
| T |
180901 |
gaaaatctgacgtcatccacctctaagcgatcaagccgtaagcggtaatggtgcacatttttatgccctttgcatgtaagccatctcccagcacatggtc |
181000 |
T |
|
| Q |
323 |
tctccgacttccaactcc-tgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatcc |
389 |
Q |
| |
|
|||||||| ||| ||||| |||| | ||| |||||||| ||| || |||||||| |||||| ||||| |
|
|
| T |
181001 |
tctccgacgtcc-actccttgtttttcttccttgggtacggacctgacaaatgctccaaaattcatcc |
181067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 124 - 328
Target Start/End: Complemental strand, 48164447 - 48164243
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||| ||||| ||||| ||||||||| |||||| ||||||||||| | | ||||||||||| |||| ||| |
|
|
| T |
48164447 |
aggtaaatgacggtacatcatctccttcccgcacatcagtcatcccgagtaagtgacaataagctgaaaagggcgtatctctcggtgatcaccataagta |
48164348 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| | | | ||||| ||||||||||||||| |||||||||||||||| ||||||| || |||||||| || |||||||||||||| || |||| || |
|
|
| T |
48164347 |
gaaaatctgacgtcattcacctctaagcgatcaagccgtgagcggtaat-gtgcacatctttatgccctttgcatgtaagccatctcccagcacatggtc |
48164249 |
T |
|
| Q |
323 |
tctccg |
328 |
Q |
| |
|
|||||| |
|
|
| T |
48164248 |
tctccg |
48164243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 18907837 - 18907563
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || |||||| || ||||||||||| ||||||||| |||||| ||||| ||| |||| ||| ||||| | |||| ||| |
|
|
| T |
18907837 |
aggtaaatgacggtacaccctctccttcctgcacatcagccatcccgagtaagtgacaataagctgaaatgggtgcacgtctctgtgatgaccataagta |
18907738 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaac----tatatgccctctggtagtaagccatctccccgcgcat |
318 |
Q |
| |
|
|| || | | ||||||||||||||||||||| ||| || ||||||||||||||||| | |||||||||||| ||||||||||||||| || ||| |
|
|
| T |
18907737 |
gaaaacctgacgtcatccacctctaagcgatcaagcagtaagcggtaatggtgcacatcagcatatatgccctctactagtaagccatctcctagcacat |
18907638 |
T |
|
| Q |
319 |
gatctctccgacttccaactcc-tgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| ||| |||| | ||| ||||| |||| | ||| ||||||| ||| ||| ||||||| |||||||||||||||| |
|
|
| T |
18907637 |
ggtctttccggcgtcc-actccttgtttttcttccttgggtatggacctggaaaatgctccaaaatccatccctgc |
18907563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 311
Target Start/End: Complemental strand, 45034310 - 45034122
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||| | |||||||| || ||||||||| ||||| ||||| ||||||||| |||||| ||||||||| | | | ||| ||||||| |||| ||| |
|
|
| T |
45034310 |
aggtaaattacggtacaccctctccttcccgcacatcagtcatcccgagtaagtgacaataagctgaaaagggtgtatctctctgtgatcaccataagta |
45034211 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccc |
311 |
Q |
| |
|
|| || | | ||||||||||| ||||||||| || ||||||||||||||||||||| || |||| ||| || | |||||| ||||||| |
|
|
| T |
45034210 |
gaaaacctgacgtcatccacctttaagcgatcaagtcgtgagcggtaatggtgcacatctttatgtcctttgcttgtaagctatctccc |
45034122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 55150363 - 55150286
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccc |
311 |
Q |
| |
|
||||||||||| ||||||||| ||| | ||||||||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
55150363 |
gtcatccacctttaagcgatcaagcattaagcggtaatggtgcacatcagtatgccctctgctagtaagccatctccc |
55150286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 271
Target Start/End: Complemental strand, 52560725 - 52560577
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || |||||| || ||||||||||| ||||||||| |||||| | ||||||||| | | ||| ||||||| |||| | | |
|
|
| T |
52560725 |
aggtaaatgacggtacaccctctccttcctgcacatcagccatcccgagtaagtgacaataagctaaaaagggcgtatctctctgtgatcaccataagga |
52560626 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaat |
271 |
Q |
| |
|
|| || | | ||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
52560625 |
gaaaacctgacgtcatccacctctaagcgatcaagccttgagcagtaat |
52560577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 18943595 - 18943638
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgca |
277 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
18943595 |
gtcatccacctccaagcgatccaggcgtgagcggtaatggtgca |
18943638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 21833224 - 21832852
Alignment:
| Q |
20 |
gggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaacc |
119 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||| |||||| | ||||| || |
|
|
| T |
21833224 |
gggtctatcaacacaggagccagcatctccttaggaatctcagcgacatctgacggatgtttgggaatgtcatgtacaaaggaaaactgccacttaaccc |
21833125 |
T |
|
| Q |
120 |
gtcaaggtaaatgaaggtacaccatcc-cttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcata |
218 |
Q |
| |
|
| ||||||||| ||||||| || |||||||| || |||||||| ||||||||| |||||| ||||| || ||| | ||| |||||||||||| |
|
|
| T |
21833124 |
gctctggtaaatgacagtacaccctcttcttcccgcacataagccatcccgagtaagtgacaataagctgaaatggatgcatctctctgtgatcatcata |
21833025 |
T |
|
| Q |
219 |
tgtagaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcat |
318 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| || ||| ||||||||||||| | ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
21833024 |
tgtagaccacctcacttcatccacctctaagcgatccaggagtacgcgataatggtgcacaaatgtatgccctctggtagtaagtcatctccccgcacat |
21832925 |
T |
|
| Q |
319 |
gatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccct |
391 |
Q |
| |
|
| ||| |||| |||||||||| |||| | ||| ||| |||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
21832924 |
ggtctttccggcttccaactcttgtttttcttccttgagtacggacctggcaaatgctccaaaattcatccct |
21832852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 389
Target Start/End: Complemental strand, 20723357 - 20722987
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaagg |
126 |
Q |
| |
|
|||||| |||||||| ||||||||| || ||||||||||||||| | |||||| ||||||||| ||| ||| |||||||| ||| ||| | | | ||| |
|
|
| T |
20723357 |
tcaacaaagtagccaacatctcctttggcatctcagggacatctgatggatgtctggggatgtaatgtttaaagccaaactggctcgtaacctgcccagg |
20723258 |
T |
|
| Q |
127 |
taaatgaaggtacacc-atcccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| |||||||| | ||||||||| || || |||| ||||||||| |||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
20723257 |
taaatgacggtacaccttttccttcccgcacataagttatcccgagtaagtgacaataagctgaaaagggcgcatttctctatgatcatcatatgtagac |
20723158 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatgg-------tgcacaactatatgccctctggtagtaagccatctccccgcgcat |
318 |
Q |
| |
|
||| || ||| |||||||||||||||| || || |||||||||| ||||||||| ||||||||||| |||||| ||||||||| || ||| |
|
|
| T |
20723157 |
caccacacatcacccacctctaagcgatcaaggagtaggcggtaatggtacacactgcacaactgtatgccctctgttagtaatccatctccctgcacat |
20723058 |
T |
|
| Q |
319 |
gatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatcc |
389 |
Q |
| |
|
| |||||||| |||||||||| |||| | ||| ||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
20723057 |
ggtctctccggcttccaactcttgtttttcttccctgggtacggacctgacaaatgctcaaaaatccatcc |
20722987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 26391280 - 26391010
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| | |||||||| ||||||||| |||||| ||| || |||| | | ||| ||||||| |||| ||| |
|
|
| T |
26391280 |
aggtaaatgacggtacaccctctccttcccgcacactagccatcccgagtaagtgacaataagctgagaatggcgtatctctctgtgatcaccataagta |
26391181 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
| || | | |||||||||| |||||||||| || || ||||||||||||||||| | ||||||||||| |||||||||||||||| || |||| || |
|
|
| T |
26391180 |
aaaaacctgacgtcatccaccactaagcgatcaagtagtaagcggtaatggtgcacatcagtatgccctctgctagtaagccatctcccagcacatggtc |
26391081 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| |||||| ||| |||| | ||| |||||||| ||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
26391080 |
tctccggcttccagctcttgtttttcttccttgggtacggacctggtaaatgctccaaaattcatccctgc |
26391010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 124 - 388
Target Start/End: Original strand, 695223 - 695487
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatcccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtag |
223 |
Q |
| |
|
|||||||||| |||||||| || | | |||| ||||| ||||| ||||||||| | ||| ||||| || ||||| ||| ||||||| |||| |||| |
|
|
| T |
695223 |
aggtaaatgacggtacaccctctccttccgcacatcagtcatcccgagtaagtgcacagaagctgaaattggtgcacctctctgtgatcaccataagtag |
695322 |
T |
|
| Q |
224 |
accacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatct |
323 |
Q |
| |
|
| || | | ||||||||||||||||||||| ||| || |||||||||| |||||| || |||||||| || |||||||||||||||| || |||| ||| |
|
|
| T |
695323 |
aaaacctgacgtcatccacctctaagcgatcaagcagtaagcggtaatgatgcacatctgtatgccctttgctagtaagccatctcccagcacatggtct |
695422 |
T |
|
| Q |
324 |
ctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatc |
388 |
Q |
| |
|
||||||| |||| ||| |||| | ||| |||||||| ||| |||||||| || |||||||||| |
|
|
| T |
695423 |
ctccgacgtccagctcttgtttttcttccttgggtacagacctggcaaatactctaaaatccatc |
695487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 393
Target Start/End: Original strand, 2120337 - 2120607
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| ||||| || || ||| |||| ||| ||||||| |||| ||| |
|
|
| T |
2120337 |
aggtaaatgacggtacaccctctccttcccgcacatcagccatcccgagtaagtgacaataaactggaatgggtgcacgtctctgtgatcaccataagta |
2120436 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | |||||||||||||| ||| |||||| ||| ||||||||||||||||| || |||| ||| || | ||||||||||||| || |||| || |
|
|
| T |
2120437 |
gaaaacctgatgtcatccacctccaaggaatccaggcgtaagcggtaatggtgcacatctttatgtcctttgcttgtaagccatctcctagcacatggtc |
2120536 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||||| | |||| |||||| | ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
2120537 |
tctccagcgtccactccctgtttttcttccttgggtacggacctggcaaatgctccaaaatccatccctgc |
2120607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 236 - 393
Target Start/End: Original strand, 31501734 - 31501891
Alignment:
| Q |
236 |
catccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttcca |
335 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||||||| || ||||||||||| |||||||||||||||| || |||| |||||| | |||||| |
|
|
| T |
31501734 |
catccacctccaagcgatccaggcgtaagcggtaatggtgcacatctttatgccctctgctagtaagccatctcccagcacatggtctctctggcttcca |
31501833 |
T |
|
| Q |
336 |
actcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| |||| | ||| ||||||| ||| | |||||||| |||||||||||||||| |
|
|
| T |
31501834 |
cctcgggttaggcttccttgggtaaggacctaacaaatgctccaaaatccatccctgc |
31501891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 40613338 - 40613538
Alignment:
| Q |
126 |
gtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtaga |
224 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||||||||| ||||||||| | ||| |||||||||||||| || ||||||| |||| ||| | |
|
|
| T |
40613338 |
gtaaatgacggtacaccctctccttcccgaacatcagccatcccgagtaagtgcacaaaagctgaaaagggcgcacatctatgtgatcaccataagtaca |
40613437 |
T |
|
| Q |
225 |
ccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctc |
324 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| || |||||||||||||||| || |||| |||| |
|
|
| T |
40613438 |
aaacctcacatcatccacctctaagcgatccagccgtaagcggtaatggtgcacatatttatgccctttgctagtaagccatctcccagcacatggtctc |
40613537 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
|
| |
|
|
| T |
40613538 |
t |
40613538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 29901899 - 29901627
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| | |||||| || ||||| ||| ||||||||||| ||||||||| | ||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
29901899 |
aggtaaatgacgatacaccttctccttctcgcacatcagccatcccgagtaagtgcacagaaggtgaaaagggcgcacttctctgtgatcaccatatgta |
29901800 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||| || ||||||||| |||||| | |||||| |||| |||||| ||||||||| || |||| || |
|
|
| T |
29901799 |
gaaaacctcacatcatccacctctaagcgatccagaagtaggcggtaatgttgcacatatgtatgccttctgctagtaatccatctcccagcacatggtc |
29901700 |
T |
|
| Q |
323 |
tctccgact--tccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||||| | |||| || ||||| | ||| |||||||| ||| || |||| ||| |||||||||||||||| |
|
|
| T |
29901699 |
tctcctttttgtccacttcgtgttaggcttccttgggtacggacctgtcaaaggctccaaaatccatccctgc |
29901627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 328
Target Start/End: Complemental strand, 28652272 - 28652090
Alignment:
| Q |
146 |
ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctc |
245 |
Q |
| |
|
||||||||| || ||||||| ||||||||| |||||| || || ||| |||| ||| ||||||| |||| ||||| || | | |||||||||||| |
|
|
| T |
28652272 |
ccttcccgcacattagccatctcgagtaagtgacaataagctggaatgggtgcacgtctctgtgatcaccataagtagaaaacctgacgtcatccacctc |
28652173 |
T |
|
| Q |
246 |
taagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccg |
328 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| || |||| ||| || | |||||||||||||| || ||||||||||||| |
|
|
| T |
28652172 |
caagcgatccaggcgtaagcggtaatggtgcacatctttatgtcctttgcttgtaagccatctcccagcacatgatctctccg |
28652090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 124 - 391
Target Start/End: Complemental strand, 4174437 - 4174169
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | |||| ||||| |||||||| |||||| |||||| | | | | ||| ||||||| |||| ||| |
|
|
| T |
4174437 |
aggtaaatgacggtacaccatctccttcccacacatcactcatcccaagtaagtgacaataagctgaaaaagatgtatctctctgtgatcaccataagta |
4174338 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | |||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| || |||||||||||||| || |||| || |
|
|
| T |
4174337 |
gaaaacctgacgtcatccacctctaagtgatcaagccatgagcggtaatggtgcacaactttatgccctttgcatgtaagccatctcccagcacatggtc |
4174238 |
T |
|
| Q |
323 |
tctccgacttccaactcc-tgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccct |
391 |
Q |
| |
|
||| | | ||| ||||| |||| | ||| |||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
4174237 |
tcttcagcgtcc-actccttgtttttcttccttgggtacggacctgacaaatgctccaaaatccatccct |
4174169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 34458064 - 34458027
Alignment:
| Q |
235 |
tcatccacctctaagcgatccagccgtgagcggtaatg |
272 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
34458064 |
tcatccacctctaagagatccagccgtaagcggtaatg |
34458027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 63117 - 63490
Alignment:
| Q |
20 |
gggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaacc |
119 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||||||||| || ||||| ||||||||||| ||| | ||||||| | ||||| | || |
|
|
| T |
63117 |
gggtctttgaacacagtagccaccatctccgcaggaatctcagggacatctgacagatgtctggggatgtccagtatatacccaaagggcctcttcaccc |
63216 |
T |
|
| Q |
120 |
gtcaaggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcata |
218 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| || |||||||||| |||||||||| ||||| ||||||||||||||| ||| | ||||||||| |
|
|
| T |
63217 |
gctcaggtaaatgatggtacaccatctccttcctgcacatcagccatcgtgagtaagtgcaaataatctgaaaagggcgcaccgctctcttatcatcata |
63316 |
T |
|
| Q |
219 |
tgtagaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcat |
318 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||| || || ||||||||||||||||| | |||||||||| |||||||||||||||| || ||| |
|
|
| T |
63317 |
tgcagaccacttcgcgtcatccacctctaagcgatctaggagtcggcggtaatggtgcacaattgaatgccctctgctagtaagccatctcccggcacat |
63416 |
T |
|
| Q |
319 |
gatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| |||||||| |||| ||| | ||| | ||| |||||||| ||| ||| ||||||| |||||||||||||||| |
|
|
| T |
63417 |
ggtctctccggcttctggctcttattaggcttccttgggtacggac-tggaaaatgctccaaaatccatccctgc |
63490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 22823 - 22553
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| || |||||| ||||| |||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
22823 |
aggtaaatgacggtacaccttctccttcccgcacatcagccatcccgattaagtgcacataagctgaaaagggcgcacttctctttgatcatcataagta |
22724 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||||||| |||||||||| |||||| || |||||||||| ||||||||||||||| || |||| || |
|
|
| T |
22723 |
gaaaacctcacatcatccacctctaagcgatccagccgtaagcggtaatgctgcacatctgtatgccctcttctagtaagccatctcctagcacatggtc |
22624 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| || | |||||| || |||| | ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
22623 |
tgtcaggcttccacttcgtgtttttcttccttgggtacggacctggcaaatgctccaaaatccatccctgc |
22553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 124 - 393
Target Start/End: Original strand, 16357915 - 16358185
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| || |||||| ||||| |||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
16357915 |
aggtaaatgacggtacaccttctccttcccgcacatcagccatcccgattaagtgcacataagctgaaaagggcgcacttctctttgatcatcataagta |
16358014 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||||||| |||||||||| |||||| || |||||||||| ||||||||||||||| || |||| || |
|
|
| T |
16358015 |
gaaaacctcacatcatccacctctaagcgatccagccgtaagcggtaatgctgcacatctgtatgccctcttctagtaagccatctcctagcacatggtc |
16358114 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| || | |||||| || |||| | ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
16358115 |
tgtcaggcttccacttcgtgtttttcttccttgggtacggacctggcaaatgctccaaaatccatccctgc |
16358185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 147 - 393
Target Start/End: Original strand, 12025392 - 12025638
Alignment:
| Q |
147 |
cttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctct |
246 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||||| | | ||| ||||||| |||| ||||| || | | ||||||| ||| | |
|
|
| T |
12025392 |
cttcccgcacatcagccatcccgagtaagtgacaataagttgaaaagggcgtatctctctgtgatcaccataagtagaaaacctgacgtcatcccccttt |
12025491 |
T |
|
| Q |
247 |
aagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttat |
346 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| | ||||||||||| |||||| ||||||||| | |||| |||||||| |||||| ||| |||| | |
|
|
| T |
12025492 |
aagcgatcaagcagtaagcggtaatggtgcacatcagtatgccctctgctagtaatccatctcccaacacatggtctctccggcttccagctcttgtttt |
12025591 |
T |
|
| Q |
347 |
gtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| |||||||| ||| | ||||| ||| |||||||||||||||| |
|
|
| T |
12025592 |
tcttccttgggtacggacctagcaaaggctccaaaatccatccctgc |
12025638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 146 - 393
Target Start/End: Original strand, 39389298 - 39389545
Alignment:
| Q |
146 |
ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctc |
245 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||| ||||||||| | | | ||| ||||||| |||| |||| || | | |||||||||||| |
|
|
| T |
39389298 |
ccttcccgcacatcagccatcccgagtaagtgacaataagctgaaaagggtgtatctctctgtgatcaccataactagaaaacctgacgtcatccacctc |
39389397 |
T |
|
| Q |
246 |
taagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcc-tgtt |
344 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||| | |||||||| | |||||||||||||||| || ||||||||||||| | ||| ||||| |||| |
|
|
| T |
39389398 |
taagcgatcaagcagtaagcggtaatggtgcacatcagtatgccctttactagtaagccatctcccagcacatgatctctccggcgtcc-actccttgtt |
39389496 |
T |
|
| Q |
345 |
atgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| ||| |||||||| ||| || |||||||| |||||||||||||||| |
|
|
| T |
39389497 |
tttcttccttgggtacggacctgacaaatgctccaaaatccatccctgc |
39389545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 391
Target Start/End: Original strand, 54603011 - 54603254
Alignment:
| Q |
147 |
cttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctct |
246 |
Q |
| |
|
|||||||| ||||||||||| |||||| | |||||| ||||| ||| |||| ||| ||||||| |||||||||| || | | |||||||||||| |
|
|
| T |
54603011 |
cttcccgcacatcagccatcccgagtaaatcacaataagctgaaatgggtgcacgtctctgtgatcaccatatgtagaaaacctgacatcatccacctct |
54603110 |
T |
|
| Q |
247 |
aagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcc-tgtta |
345 |
Q |
| |
|
|||||||| ||| || | ||||||||||||||| | |||| ||||| ||||||| |||||| | || ||| |||||||| | ||| ||||| |||| |
|
|
| T |
54603111 |
aagcgatcaagcagtaaccggtaatggtgcacatcagtatg-tctctgctagtaagtcatctctcagcatatggtctctccggcgtcc-actccttgttt |
54603208 |
T |
|
| Q |
346 |
tgtttctttgggtactgacttggcaaatgcttcaaaatccatccct |
391 |
Q |
| |
|
| ||| |||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
54603209 |
ttcttccttgggtacggacctggcaaatgctccaaaatccatccct |
54603254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 28507784 - 28508073
Alignment:
| Q |
23 |
tctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtc |
122 |
Q |
| |
|
||||| |||||| |||||| ||| ||| | ||||||||||||||||| |||||||| ||||||||||||| | | |||||||||| ||||| | ||| |
|
|
| T |
28507784 |
tctttgaacacattagccatcatatccacaagaatctcagggacatctgacggatgtttggggatgtcctgcatatacccaaactgcctcttcacccgct |
28507883 |
T |
|
| Q |
123 |
aaggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgt |
221 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| |||||||||| |||||||||| ||||| |||||| |||||||| ||| |||||||| |||||| |
|
|
| T |
28507884 |
taggtaaatgacggtacaccctctccttcccgcaaatcagccatcttgagtaagtgcaaataatctgaaaatggcgcaccgctctgtgatcatgatatgt |
28507983 |
T |
|
| Q |
222 |
agaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccc |
311 |
Q |
| |
|
|||||||||| |||||||||| || |||||| || || | ||||||||||||| | | |||||||| |||||||||||||||| |
|
|
| T |
28507984 |
agaccacttcgcgtcatccacccatatgcgatctaggagtcggtggtaatggtgcaccgttgtttgccctcttctagtaagccatctccc |
28508073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 11405470 - 11405752
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaagg |
126 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||||||| |||| |||||||| ||||||||| ||||| ||| |||||| ||||| | || ||| |
|
|
| T |
11405470 |
tcaatacagtagccatcatctccttaggcatctcagggatatctgacggatgtctggggatgtactgtataaagtcaaacttcctctttaccctctcagg |
11405569 |
T |
|
| Q |
127 |
taaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| |||||||| || ||| ||||| |||||||||| ||||||||| | ||| |||||||||| ||| ||| ||||||| |||| ||||| |
|
|
| T |
11405570 |
taaatgacggtacaccctctcctacccgcacatcagccatctcgagtaagtgcacagaagctgaaaagggcacacttctctgtgatcaccataagtagaa |
11405669 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctc |
309 |
Q |
| |
|
|| ||| | |||||||||||||||||| ||| || |||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
11405670 |
aacctcaaattatccacctctaagcgatctagc-gtaagcggtaatgttgcacatctatatgccctctactagtaagccatctc |
11405752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 389
Target Start/End: Original strand, 6321331 - 6321596
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||| ||||||||||| ||||| ||| |||||| ||||| || || | ||| ||||||| |||| ||| |
|
|
| T |
6321331 |
aggtaaatgacggtacaccctctccttctcgcacatcagccatcccgagtacgtgacaataagctgaaatggt-gctcgtctctgtgatcaccataagta |
6321429 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| |||| | ||||||||||||||||||||| ||| || ||||||||||||||||| | |||||||| || |||||||||||||||| || |||| || |
|
|
| T |
6321430 |
gaaaacttgacgtcatccacctctaagcgatcaagcagtaagcggtaatggtgcacatcattatgccctatgctagtaagccatctcccagcacatggtc |
6321529 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatcc |
389 |
Q |
| |
|
|||||| | ||||| | |||| | ||| |||||||| ||| ||||||||||| |||||| ||||| |
|
|
| T |
6321530 |
tctccggcgtccaatccttgtttttattccttgggtacagacctggcaaatgctccaaaattcatcc |
6321596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 146 - 393
Target Start/End: Complemental strand, 10554227 - 10553980
Alignment:
| Q |
146 |
ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctc |
245 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| |||||| || || ||| |||| ||| ||||||| |||| ||||| || | | ||||||||||| |
|
|
| T |
10554227 |
ccttcccgcacaccagccatcccgagtaagtgacaataagctggaatgggtgcacgtctctgtgatcaccataagtagaaaacctgacgtcatccacctt |
10554128 |
T |
|
| Q |
246 |
taagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgtta |
345 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| || |||| ||| || | |||| ||||||||| || |||||||||||| | |||| |||||| |
|
|
| T |
10554127 |
caagcgatccaggcgtaagcggtaatggtgcacatctttatgtcctttgcttgtaaaccatctcccagcacatgatctctccagcgtccactccctgttt |
10554028 |
T |
|
| Q |
346 |
tgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
10554027 |
ttcttccttgggtacggacatggcaaatgctccaaaatccatccctgc |
10553980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 41963856 - 41963697
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||||||||| | |||||| |||| ||| ||||||||||| || |||| ||||| |||| || |
|
|
| T |
41963856 |
gtcatccacctctaagcgatcaagcagtaagcggtaatggtgcacatcagtatgccatctgctagcaagccatctcctagcacatggtctcttcgacgtc |
41963757 |
T |
|
| Q |
334 |
caactcc-tgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
| ||||| |||| | ||| |||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
41963756 |
c-actccttgtttttcttccttgggtacgaacctgacaaatgcttcaaaatccatccctgc |
41963697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 3939679 - 3939535
Alignment:
| Q |
11 |
cacagacaggggtctttcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtc |
110 |
Q |
| |
|
||||||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||| |||||||| || ||||| |||| ||| |||||||| | |
|
|
| T |
3939679 |
cacagactggggtctaccaacaaagtagcaagcatctccttaggcatctcagggacatctgacggatgtctgcagatgttatgtataaatccaaactgcc |
3939580 |
T |
|
| Q |
111 |
tcttaaaccgtcaaggtaaatgaaggtacaccatc-ccttcccgc |
154 |
Q |
| |
|
|||||| ||| |||||||||| | |||||| || ||||||||| |
|
|
| T |
3939579 |
tcttaacccgctcaggtaaatgacgatacaccctctccttcccgc |
3939535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 326
Target Start/End: Original strand, 46526901 - 46527104
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| |||||| ||||| || |||| |||| ||||||| |||| ||| |
|
|
| T |
46526901 |
aggtaaatgacggtacaccatatccttcccgcacatcagccatcccgagtaagtgacaataagctgaaatggatgcacgactctgtgatcaccataagta |
46527000 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| | | | ||||||||||| ||||||||| ||| || |||| ||||||| |||| | ||| | |||| |||||||||||||||| ||| ||| || |
|
|
| T |
46527001 |
gaaaatctgacgtcatccacctataagcgatcaagcagtaagcgataatggtacacatcagtatatcatctgctagtaagccatctcccagcgtatggtc |
46527100 |
T |
|
| Q |
323 |
tctc |
326 |
Q |
| |
|
|||| |
|
|
| T |
46527101 |
tctc |
46527104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 11382100 - 11382162
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgt |
89 |
Q |
| |
|
|||| |||||| ||| |||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
11382100 |
tcaatacagtaaccatcatctccttaggcatctcagggacatctgacggatgtctggggatgt |
11382162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 11406115 - 11406217
Alignment:
| Q |
36 |
tagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaaggtaaatgaag |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | |||||||| || | |||||| ||| ||| |||||||| ||||||| |||| |||||||||| | |
|
|
| T |
11406115 |
tagccagcatctccttaggcatctcagggagaattgacggatgtttgagaatgtccagtataaagccaaactgcctcttaacccgttcaggtaaatgacg |
11406214 |
T |
|
| Q |
136 |
gta |
138 |
Q |
| |
|
||| |
|
|
| T |
11406215 |
gta |
11406217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 61 - 393
Target Start/End: Complemental strand, 50914579 - 50914246
Alignment:
| Q |
61 |
agggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaaggtaaatgaaggtacaccatc-ccttcccgcgtatc |
159 |
Q |
| |
|
|||||||||| |||||||| |||| | |||||||||||| ||||| ||||| | ||| |||||||||| |||||||| || ||||||||| || |
|
|
| T |
50914579 |
agggacatctgacggatgtctgggaacgtcctgtacaaaggataactgcctctttacccgctcaggtaaatgacggtacaccctctccttcccgcacatg |
50914480 |
T |
|
| Q |
160 |
agccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctctaagcgatccagcc |
259 |
Q |
| |
|
|||||||| | ||||||| | ||| ||||| ||| |||| ||| ||||||| |||| ||||| || | | ||||||||||||||||||||| ||| |
|
|
| T |
50914479 |
agccatcccgggtaagtgcacagaagctgaaatgggtgcacgtctctgtgatcaccataagtagaaaacctgacgtcatccacctctaagcgatcaagca |
50914380 |
T |
|
| Q |
260 |
gtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttatgtttctttgggta |
359 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||| |||||||||||||||| || |||| |||||||| | |||||||| |||| | ||| ||||||| |
|
|
| T |
50914379 |
gtaagcggtaatggtgcacatcagtatgccctctgctagtaagccatctcccagcacatggtctctccggcgtccaactcttgtttttcttccttgggta |
50914280 |
T |
|
| Q |
360 |
ctgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||| |
|
|
| T |
50914279 |
tggacctggcaaatgctccaaaattcatccctgc |
50914246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 31387166 - 31386896
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| || |||||||| ||||||||| ||||| ||||| ||| |||| ||| ||||||| |||| ||| |
|
|
| T |
31387166 |
aggtaaatgacggtacaccctctccttcccgcacatgagccatcccgagtaagtgcacataagctgaaatgggtgcacgtctctgtgatcaccataagta |
31387067 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | |||||||||||| |||||||||| ||| ||||||||||||| ||| || ||||||||||| |||||||||||||||| || |||| || |
|
|
| T |
31387066 |
gaaaacctaacgtcatccacctccaagcgatccatacgtaagcggtaatggtggacatctttatgccctctgctagtaagccatctcccagcacatggtc |
31386967 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| |||||| ||| |||| | ||| ||||||| ||| || |||||||| |||||||||||||||| |
|
|
| T |
31386966 |
tctccggcttccacctcgggttaggcttccttgggtaaggacctgacaaatgctccaaaatccatccctgc |
31386896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 393
Target Start/End: Complemental strand, 18242688 - 18242321
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaagg |
126 |
Q |
| |
|
|||||||||| | ||||| || | |||| | || |||||||||| |||||||| |||| | ||| |||||||| ||||||||||| | ||| ||| |
|
|
| T |
18242688 |
tcaacacagtggtcagcaactgcgtaggcacctgagggacatcttacggatgtctgggaacgtcttgtacaaaggataactgtctctttacccgctcagg |
18242589 |
T |
|
| Q |
127 |
taaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| ||||||| || ||||||||| || || ||||| |||||||| ||||| ||||| ||| |||| ||| ||||||| |||| ||||| |
|
|
| T |
18242588 |
taaatgacagtacaccctctccttcccgcacatgagtcatcccaagtaagtgcacataagctgaaatgggtgcacgtctctgtgatcaccataagtagaa |
18242489 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctct |
325 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||| || || | |||||||||||| | |||||||||| |||||||||||||||| || |||| | ||| |
|
|
| T |
18242488 |
aacttgacgtcatccacctctaagcgatcaagcagtaagtgttaatggtgcacatcagtatgccctctactagtaagccatctcccagcacatggtatct |
18242389 |
T |
|
| Q |
326 |
ccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| | |||| |||||||| | ||| |||||||| || | ||||||||| |||||| ||||||||| |
|
|
| T |
18242388 |
ccggcgtccagctcctgtttttcttccttgggtacaaacctagcaaatgctccaaaattcatccctgc |
18242321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 393
Target Start/End: Original strand, 4912531 - 4912690
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
|||| ||||||| |||||||| || ||| ||||||||||||||||| || |||||||||| |||||||||||||||| || |||| | |||||| |||| |
|
|
| T |
4912531 |
gtcacccacctccaagcgatctaggcgtaagcggtaatggtgcacatctttatgccctctaatagtaagccatctcccagcacatggtatctccggcttc |
4912630 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|| | | |||| | ||| ||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4912631 |
caccccgggttaggcttccttgggtaaggacctggcaaatgctccaaaatccatccctgc |
4912690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 393
Target Start/End: Original strand, 42464010 - 42464377
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaagg |
126 |
Q |
| |
|
|||||||||| | ||||| || | |||| | || |||||||||| |||||||| |||| | ||||| |||||| ||||| ||||| | || ||| |
|
|
| T |
42464010 |
tcaacacagtggtcagcaactgcgtaggcacctgagggacatctgacggatgtctgggaacgtcctatacaaaggataactgcctctttacccactcagg |
42464109 |
T |
|
| Q |
127 |
taaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || |||||||| ||||||||| | ||| ||||| || |||| ||| |||||| |||| ||||| |
|
|
| T |
42464110 |
taaatgacggtacaccatctccttcccgcacatgagccatcccgagtaagtgcacagaagctgaaatggatgcacgtctctatgatcaccataagtagaa |
42464209 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctct |
325 |
Q |
| |
|
|| | | |||||||||||| |||||||||| ||| |||||| |||||||||| || ||||||||||| ||||||| |||||||| || |||| ||||| |
|
|
| T |
42464210 |
aacctgacgtcatccacctccaagcgatccatacgtaagcggtgatggtgcacatctttatgccctctgctagtaagtcatctcccagcacatggtctct |
42464309 |
T |
|
| Q |
326 |
ccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
||| ||||| | | |||| | | | ||||||| ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
42464310 |
ccggcttccgccccgggttaggctcccttgggtaaggacctggcaaatgctccaaaattcatccctgc |
42464377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 393
Target Start/End: Original strand, 46192889 - 46193047
Alignment:
| Q |
235 |
tcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttcc |
334 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||||| || |||||||| || |||| |||||| || || |||| |||||||||| ||| |
|
|
| T |
46192889 |
tcatccacctctaagcgatcaagccgtaagtggtaatggtgcacatctttatgccctttgcatgtaaaccatcttccagcacatggtctctccgacgtcc |
46192988 |
T |
|
| Q |
335 |
aactcctgttatgt-ttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||| | || | | ||| ||||||| ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
46192989 |
-actcgttttttttcttccttgggtatggacctggcaaatgctccaaaattcatccctgc |
46193047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 27106620 - 27106694
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatct |
308 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||||||| | || |||| |||||| ||||||||||||| |
|
|
| T |
27106620 |
gtcatccacctccaagcgatccatgcgtaagcggtaatggtgcatatctttatgtcctctgctagtaagccatct |
27106694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 389
Target Start/End: Complemental strand, 27186 - 26816
Alignment:
| Q |
27 |
tcaacacagtagccagcatctccttaggaatctcagggacatctaacggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaagg |
126 |
Q |
| |
|
|||||| |||||||| ||||||||| || ||||||||||||||| | |||||| ||||||||| ||| ||| |||||||| ||| ||| | | | ||| |
|
|
| T |
27186 |
tcaacaaagtagccaacatctcctttggcatctcagggacatctgatggatgtctggggatgtaatgtttaaagccaaactggctcgtaacctgcccagg |
27087 |
T |
|
| Q |
127 |
taaatgaaggtacacc-atcccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagac |
225 |
Q |
| |
|
||||||| |||||||| | ||||||||| || || |||| ||||||||| |||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
27086 |
taaatgacggtacaccttttccttcccgcacataagttatcccgagtaagtgacaataagctgaaaagggcgcatttctctatgatcatcatatgtagac |
26987 |
T |
|
| Q |
226 |
cacttcatgtcatccacctctaagcgatccagccgtgagcggtaatgg-------tgcacaactatatgccctctggtagtaagccatctccccgcgcat |
318 |
Q |
| |
|
||| || ||| |||||||||||||||| || || |||||||||| ||||||||| ||||||||||| |||||| ||||||||| || ||| |
|
|
| T |
26986 |
caccacacatcacccacctctaagcgatcaaggagtaggcggtaatggtacacactgcacaactgtatgccctctgttagtaatccatctccctgcacat |
26887 |
T |
|
| Q |
319 |
gatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatcc |
389 |
Q |
| |
|
| |||||||| |||||||||| |||| | ||| ||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
26886 |
ggtctctccggcttccaactcttgtttttcttccctgggtacggacctgacaaatgctcaaaaatccatcc |
26816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 124 - 393
Target Start/End: Original strand, 9039377 - 9039647
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| ||||| || || ||||||||| ||||| ||||||||||||||| |||||| ||||||||||| | | ||| |||||| |||| ||| |
|
|
| T |
9039377 |
aggtaaatgacggtaccccctctccttcccgcacatcagtcatcctgagtaagtgacaataagctgaaaagggcgtatctctctatgatcaccataagta |
9039476 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | ||||||||||||||||||||| |||||| ||||||||||||||||| || ||||| || ||| |||||||||||||| || |||| || |
|
|
| T |
9039477 |
gaaaaccttacgtcatccacctctaagcgatcaagccgttagcggtaatggtgcacatctttatgctctttggatgtaagccatctcccagcacatggtc |
9039576 |
T |
|
| Q |
323 |
tctccgacttccaactc-ctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||||| ||| |||| |||| | ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
9039577 |
tctccgacgtcc-actcattgtttttcttccttgggtacagacctggcaaatgctccaaaatccatccctgc |
9039647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 19876257 - 19875987
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| |||||||||||||||||| | | ||| ||||||| |||| ||| |
|
|
| T |
19876257 |
aggtaaatgacggtacaccctctccttcccgcacatcagccatcccgagtaagtgacaataagttgaaaagggcgtatctctctgtgatcaccataagta |
19876158 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
| || | | | ||||||||||||||||||| ||| || |||||||||||||||| | |||||||||||| |||||||||||||||| || |||| || |
|
|
| T |
19876157 |
aaaaacctgacgacatccacctctaagcgatcaagcagtacgcggtaatggtgcacatcaatatgccctctgctagtaagccatctcccagcacatggtc |
19876058 |
T |
|
| Q |
323 |
tctccgacttccaactcc-tgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| | ||| ||||| |||| | ||| |||||||| ||| || |||||||| ||||||||||||||| |
|
|
| T |
19876057 |
tctccggcgtcc-actccttgtttttcttccttgggtacagacctgacaaatgctctaaaatccatccctgc |
19875987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 23066888 - 23066618
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| |||||||| ||||||| | | | ||| ||||||| |||| ||| |
|
|
| T |
23066888 |
aggtaaatgatggtacaccctctccttcccgcacatcagccatcccgagtaagtgacaataagtttaaaagggtgtatctctctgtgatcaccataagta |
23066789 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | ||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||| || |||||||||||| | || |||| || |
|
|
| T |
23066788 |
gaaaacctgacgtcatccacctctaagcgatcaagccgtgagcggtaatggtacacatctttatgccctttgcatgtaagccatctcgcagcacatggtc |
23066689 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttct---ttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| | ||| ||||| || ||||||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
23066688 |
tctccggcgtcc-actcc--ttgtgtttcttccttgggtacggacctggcaaatgctccaaaatccatccctgc |
23066618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 124 - 393
Target Start/End: Original strand, 37980745 - 37981015
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| |||||| || || ||| |||| ||| ||||||| |||| ||| |
|
|
| T |
37980745 |
aggtaaatgacggtacaccctctccttcccgcacatcagccatcccgagtaagtgacaataagctggaatgggtgcacgtctctgtgatcaccataagta |
37980844 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | |||||||||||| ||||||||||| ||| |||||||||| |||||| || |||| ||| || | |||||||||||||| || |||| || |
|
|
| T |
37980845 |
gaaaacctgacgtcatccacctcaaagcgatccagacgtaagcggtaatgatgcacatctttatgtcctttgcttgtaagccatctcccagcacatggtc |
37980944 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| | |||| |||||| | ||| |||||||| ||| || |||||||| |||||| ||||||||| |
|
|
| T |
37980945 |
tctccggcgtccactccctgtttttcttccttgggtacggacctgacaaatgctccaaaattcatccctgc |
37981015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 387
Target Start/End: Complemental strand, 7253173 - 7252909
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||||||||| ||||||||| |||||| | |||| |||| | | ||| ||||||| |||| ||| |
|
|
| T |
7253173 |
aggtaaatgacggtacaccccctccttcccgcacatcagccatcccgagtaagtgacaataagctaaaaatggcgtatctctctgtgatcaccataagta |
7253074 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| | | | ||||||||||||||||||||| ||| || || |||||||||||||| | | ||||||||| |||||||||||||| | | || | || |
|
|
| T |
7253073 |
gaaaatctgacgtcatccacctctaagcgatcaagcagtaagtggtaatggtgcacatcagtgtgccctctgctagtaagccatctcacaacacacggtc |
7252974 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccat |
387 |
Q |
| |
|
|||||| |||||||||| |||| | ||| |||||||| ||| || |||||||| |||||||||| |
|
|
| T |
7252973 |
tctccggcttccaactcttgtttttcttccttgggtacggacctgccaaatgctccaaaatccat |
7252909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1868 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1868
Description:
Target: scaffold1868; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 234 - 393
Target Start/End: Original strand, 222 - 381
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
||||||||||||||||| ||| ||| || ||||||||||||||||| | |||||||| ||| |||||||||||||||| || | || |||||||||| || |
|
|
| T |
222 |
gtcatccacctctaagcaatcaagcagtaagcggtaatggtgcacatcaatatgccccctgctagtaagccatctcccagcacgtggtctctccgacgtc |
321 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|| ||| |||| | ||| |||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
322 |
cagctcttgtttttcttcattgggtacggacctggcaaatgctccaaaatccatccctgc |
381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 124 - 393
Target Start/End: Complemental strand, 5619956 - 5619686
Alignment:
| Q |
124 |
aggtaaatgaaggtacaccatc-ccttcccgcgtatcagccatcctgagtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgta |
222 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||||||| | ||||||||| |||||| |||||||| | | | ||| ||||||| |||| ||| |
|
|
| T |
5619956 |
aggtaaatgacggtacaccctctccttcccgcacatcagccattccgagtaagtgacaataagctgaaaaggatgtatctctctgtgatcaccataagta |
5619857 |
T |
|
| Q |
223 |
gaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatc |
322 |
Q |
| |
|
|| || | | ||||||||||||||| ||||| ||| || ||||||||||||||||| | |||||||||| ||||||||||||||| || ||| || |
|
|
| T |
5619856 |
gaaaacctgacgtcatccacctctaaacgatcaagcagtaagcggtaatggtgcacatcagtatgccctctactagtaagccatctccaagcatatggtc |
5619757 |
T |
|
| Q |
323 |
tctccgacttccaactcctgttatgt-ttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||||| |||||| ||| |||| ||| ||| |||||||| ||| || ||||||| |||||||||||||||| |
|
|
| T |
5619756 |
tctccggcttccagctcttgtt-tgtcttccttgggtacggacctgataaatgctccaaaatccatccctgc |
5619686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 33522909 - 33523051
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |||||||| | ||||||||||| |||||||||||||||| || |||| |||||||| |||| |
|
|
| T |
33522909 |
gtcatccacctctaagcgatccagccgtaagcagtaacggtgcacatatttatgccctctgctagtaagccatctcccagcacatggtctctccggcttc |
33523008 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgct |
376 |
Q |
| |
|
|| ||| |||| | ||| |||||||| || ||||||||||| |
|
|
| T |
33523009 |
cacctcgggttaggcttccttgggtacaaacctggcaaatgct |
33523051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 311
Target Start/End: Original strand, 19269187 - 19269427
Alignment:
| Q |
72 |
acggatgtatggggatgtcctgtacaaacccaaactgtctcttaaaccgtcaaggtaaatgaaggtacaccatccc-ttcccgcgtatcagccatcctga |
170 |
Q |
| |
|
||||||||||||| | ||| ||||||||| ||||||| |||| | ||| |||||||||| |||||||| || | |||| || |||| |||||| || |
|
|
| T |
19269187 |
acggatgtatgggaacgtcttgtacaaactcaaactgcctctatacccgctcaggtaaatgacggtacaccctctcattcctgcacatcatccatcccga |
19269286 |
T |
|
| Q |
171 |
gtaagtgttaataagttgaaaagggcgcaccactcggtgatcatcatatgtagaccacttcatgtcatccacctctaagcgatccagccgtgagcggtaa |
270 |
Q |
| |
|
||||||| | ||| |||| ||||||||| ||| |||||| |||| ||| | || ||| |||| ||||||||||||||| |||| | |||||||| |
|
|
| T |
19269287 |
gtaagtgcacagaagctgaacagggcgcactcctctatgatcaccataagtacaaaacctcacatcattcacctctaagcgatcaagccataagcggtaa |
19269386 |
T |
|
| Q |
271 |
tggtgcacaactatatgccctctggtagtaagccatctccc |
311 |
Q |
| |
|
||||||| | | ||| ||||||| ||||||||||| |||| |
|
|
| T |
19269387 |
tggtgcatatcattattccctctgctagtaagccatttccc |
19269427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 234 - 393
Target Start/End: Original strand, 18791 - 18950
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||| |||||||||||| ||||||||||| |||||||||||||||| || |||| |||||||| | || |
|
|
| T |
18791 |
gtcatccacctctaagagatcaagcagtaagcgataatggtgcacataagtatgccctctgctagtaagccatctcccagcacatggtctctccggcgtc |
18890 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|| ||| |||| | ||| |||||||| ||| | |||||| || |||||||||||||||| |
|
|
| T |
18891 |
cagctcttgtttttcttccttgggtaccgaccttgcaaatactccaaaatccatccctgc |
18950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 54053 - 53894
Alignment:
| Q |
234 |
gtcatccacctctaagcgatccagccgtgagcggtaatggtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttc |
333 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||| |||||||||||| ||||||||||| |||||||||||||||| || |||| |||||||| | || |
|
|
| T |
54053 |
gtcatccacctctaagagatcaagcagtaagcgataatggtgcacataagtatgccctctgctagtaagccatctcccagcacatggtctctccggcgtc |
53954 |
T |
|
| Q |
334 |
caactcctgttatgtttctttgggtactgacttggcaaatgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|| ||| |||| | ||| |||||||| ||| | |||||| || |||||||||||||||| |
|
|
| T |
53953 |
cagctcttgtttttcttccttgggtaccgaccttgcaaatactccaaaatccatccctgc |
53894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0850 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0850
Description:
Target: scaffold0850; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 393
Target Start/End: Complemental strand, 4936 - 4816
Alignment:
| Q |
273 |
gtgcacaactatatgccctctggtagtaagccatctccccgcgcatgatctctccgacttccaactcctgttatgtttctttgggtactgacttggcaaa |
372 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||| || |||| |||||| | |||||| ||||| || | ||| |||||||| ||| ||| ||| |
|
|
| T |
4936 |
gtgcacatctgtatgccctcttctagtaagccatctcccagcacatggtctctcaggcttccagctcctatttttcttccttgggtacggacctggaaaa |
4837 |
T |
|
| Q |
373 |
tgcttcaaaatccatccctgc |
393 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
4836 |
tgctccaaaatccatccctgc |
4816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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