View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3666_low_3 (Length: 404)
Name: NF3666_low_3
Description: NF3666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3666_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 31808836 - 31809061
Alignment:
| Q |
20 |
tcaacaacagaaaggacagtctaaaaatacaaaaattccaatttaaattgacagcaagaattcaaaattctacagctcagatttggtttcagtgcatgtg |
119 |
Q |
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| T |
31808836 |
tcaacaacaaaaaggacagtctaaaaatacaaaaattccaatttaaattgacagcaagaattcaaaattctacagctcagattttgtttcagtgcatgtg |
31808935 |
T |
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| Q |
120 |
tgtgagagtgaataattttgcgtaaaaagggtctgtgaaatataacatggtgtgttactgaacttccgtgaataactgaaaatttatccaaacaaagaat |
219 |
Q |
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| T |
31808936 |
tgtgagagtgaataattttgcgtaaaaagggtctgtgaaatataacatggtgtgttactgaacttccgtgaataactgaaaatttatccaaacaaagaat |
31809035 |
T |
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| Q |
220 |
ggatataaaaaagggattatgatacc |
245 |
Q |
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| T |
31809036 |
ggatataaaaaagggattatgatacc |
31809061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 31809134 - 31809204
Alignment:
| Q |
319 |
gtgtgtgacagaaaaagatgacctcattaaaaattaaaagcattgattttctttacactttctctcctatg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809134 |
gtgtgtgacagaaaaagatgacctcattaaaaattaaaagcattgattttctttacactttctctcctatg |
31809204 |
T |
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