View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3667_low_1 (Length: 423)
Name: NF3667_low_1
Description: NF3667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3667_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 35774397 - 35773988
Alignment:
| Q |
1 |
ggaatgctccctctactttggagaagttttgtcataaaggtaacaagtttatgcagctctttagtgtctttagttggagcagaatgctcacacatatggt |
100 |
Q |
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| T |
35774397 |
ggaatgctccctctactttggagaagttttgtcataaaggtaacaagtttatgcagctctttagtgtctttagttggagcagaatgctcacacatatggt |
35774298 |
T |
|
| Q |
101 |
ttttacttgttgtttagcgtatgtttttattcattgcttctctttggtactttactcagctgtttagtagaatcaccatttccaataaatatgcagagac |
200 |
Q |
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| T |
35774297 |
tgttacttgttgtttagcatatgattttattcattgcttctctttggtactttactcagctgttaagtagaatcaccatttccaataaatatgcagagac |
35774198 |
T |
|
| Q |
201 |
tgggtactcttgcagcattcaatatctttcttgttctttgttgtatctcacttttctgttttgctgggtatcgtgtaatacccagagttgaacttttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35774197 |
tgggtactcttgcagcattcaatatctttcttgttctttgttgtatctcacttttctgttttgctgggtatcgtgtaatacccagagttgaacttttcat |
35774098 |
T |
|
| Q |
301 |
gttctctgttaaacaatattatttatgtatgtttctattttnnnnnnnnnngaattttggataaacctttttccagtctacatattcgacaagctggtca |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35774097 |
gttctctgttaaacaata----ttatgtatgtttctatttttttaaaaaaagaattttggataaacctttttccagtctacatattcgacaagctggtca |
35774002 |
T |
|
| Q |
401 |
tccatggtttcctt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
35774001 |
tccatggtttcctt |
35773988 |
T |
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