View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3667_low_2 (Length: 367)
Name: NF3667_low_2
Description: NF3667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3667_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 32504970 - 32504633
Alignment:
| Q |
16 |
atacatttcttgtacactgattggatctgtataaactaagtggactcaattcgtccatgcatattatatgaccgaaggagcaacaagtaaataataataa |
115 |
Q |
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| T |
32504970 |
atacatttcttgtacactgattggatctgtataaactaagtggactcaattcgtccatgcatattatatgaccgaaggagcaacaagtaaataataat-- |
32504873 |
T |
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| Q |
116 |
tttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcatgtgaaaattgtacaggatacggtcc |
215 |
Q |
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| T |
32504872 |
-ttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcatgtgaaaattgtacaggatacggtcc |
32504774 |
T |
|
| Q |
216 |
attgaaatgtataagattggtgtgtattaatatcatatcattctcttcactcttcagagatcaaaccggcaccaacatgcattatggagctgtcctactc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504773 |
attgaaatgtataagattggtgtgtattaatatcatatcattctcttcactcttcagagatcaaaccggcaccaacatgcattatggagctgtcctactc |
32504674 |
T |
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| Q |
316 |
tcaaacacgaatttaaggcaggcattttgttcttctttctt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504673 |
tcaaacacgaatttaaggcaggcattttgttcttctttctt |
32504633 |
T |
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