View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3668_high_10 (Length: 309)
Name: NF3668_high_10
Description: NF3668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3668_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 45595276 - 45595579
Alignment:
| Q |
6 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
105 |
Q |
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| T |
45595276 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
45595375 |
T |
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| Q |
106 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacgatatagtcaagagc |
205 |
Q |
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| T |
45595376 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
45595475 |
T |
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| Q |
206 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
305 |
Q |
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| T |
45595476 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
45595575 |
T |
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| Q |
306 |
aaac |
309 |
Q |
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|||| |
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| T |
45595576 |
aaac |
45595579 |
T |
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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 27148951 - 27149117
Alignment:
| Q |
108 |
ccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacgatatagtcaagagcag |
207 |
Q |
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| T |
27148951 |
ccaagaaaacggcgatgaccttcaacagcccttgccatgtttccagaataagagggtataaatacatcactctcgatagatacaatatagtcaagagcag |
27149050 |
T |
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| Q |
208 |
ccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatatta |
274 |
Q |
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| T |
27149051 |
ccatttgagaagcatgattaaaaaagggttcaagctcctcaatggatgccaacgtttcctgaaatta |
27149117 |
T |
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