View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3668_high_2 (Length: 514)
Name: NF3668_high_2
Description: NF3668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3668_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 248 - 497
Target Start/End: Complemental strand, 6486616 - 6486367
Alignment:
| Q |
248 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
347 |
Q |
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| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
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| Q |
348 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
447 |
Q |
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| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
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| Q |
448 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
497 |
Q |
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| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
6486367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 6486838 - 6486678
Alignment:
| Q |
27 |
cagcagcaacaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatg |
126 |
Q |
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| T |
6486838 |
cagcagcaacaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatg |
6486739 |
T |
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| Q |
127 |
cgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
187 |
Q |
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| T |
6486738 |
cgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
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