View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3668_high_3 (Length: 363)
Name: NF3668_high_3
Description: NF3668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3668_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 347
Target Start/End: Complemental strand, 52127357 - 52127012
Alignment:
| Q |
2 |
gaagaagaaagccagatatcttcataggtgagtctgagacgagaaggagtgatagcgtagggtttggtgagacctggtaagaccggaacgtaaacaagct |
101 |
Q |
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| T |
52127357 |
gaagaagaaagccagatatcttcataggtgagtctgagacgagaaggagtgatagcgtaggatttggtgagacctggtaagaccggaacgtaaacaagct |
52127258 |
T |
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| Q |
102 |
tctcctgaaacgcgacgagcaatgccatgccggcgacgactaagcctccgacgccgtagagtagaatgttcatgtacgaaaccatttgtttgtgcagaga |
201 |
Q |
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| T |
52127257 |
tctcctgaaacgcgacgagcaatgccatgccggcgacgactaagcctccgacgccgtagagtagaatgttcatgtacgaaaccatttgtttgtgcagaga |
52127158 |
T |
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| Q |
202 |
ttcgaagaagaattaagcgcgtttgaattaagcggaaattgaaatgaattggagggtttcttgggaaacaccgaaataatgagattgtttcatgaatacg |
301 |
Q |
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| T |
52127157 |
ttcgaagaagaattaagcgcgtttggattaagcggaaattgaaatgaattggagggtttcttgggaaacaccgaaataatgagattgtttcatgaatacg |
52127058 |
T |
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| Q |
302 |
aatcgggtgagattatagtaccaaaagtcaagatgtgggactggct |
347 |
Q |
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| T |
52127057 |
aatcgggtgagattatagtaccaaaagtcaagatgtgggactggct |
52127012 |
T |
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