View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3668_high_5 (Length: 343)

Name: NF3668_high_5
Description: NF3668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3668_high_5
NF3668_high_5
[»] chr6 (3 HSPs)
chr6 (3-336)||(17075410-17075743)
chr6 (118-336)||(11053484-11053702)
chr6 (10-122)||(11064036-11064148)
[»] chr8 (3 HSPs)
chr8 (10-253)||(17683923-17684166)
chr8 (7-170)||(36159902-36160065)
chr8 (285-336)||(17684198-17684249)
[»] chr4 (2 HSPs)
chr4 (4-257)||(10559739-10559992)
chr4 (280-336)||(10558434-10558490)
[»] chr1 (1 HSPs)
chr1 (3-335)||(26741546-26741878)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 17075743 - 17075410
Alignment:
Q  3 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |||||||||| |     
T  17075743 cacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaagaaaccact 17075644  T
Q  103 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 202  Q
     | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | ||  || |||||||| |||| ||||||||    
T  17075643 tttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcagccgcgcca 17075544  T
Q  203 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 302  Q
    |||| |||| |||||  ||||| || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||||||||||||||    
T  17075543 cctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcaccactttctt 17075444  T
Q  303 aaccttctttcttgtcgaagaaataacaccagcg 336  Q
    ||||||||| |||| |||||||||||||||||||    
T  17075443 aaccttcttccttgccgaagaaataacaccagcg 17075410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 118 - 336
Target Start/End: Complemental strand, 11053702 - 11053484
Alignment:
Q  118 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 217  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  218 ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 316  Q
      ||||| ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  317 tcgaagaaataacaccagcg 336  Q
     ||| |||||||||||||||    
T  11053503 ccgatgaaataacaccagcg 11053484  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 11064148 - 11064036
Alignment:
Q  10 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 109  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||| |||||| || |||||     
T  11064148 ttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgaggaaaccaccttaacca 11064049  T
Q  110 cctttttaagacg 122  Q
    |||||||||||||    
T  11064048 cctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 17683923 - 17684166
Alignment:
Q  10 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||| |||||| || | |||     
T  17683923 ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca 17684022  T
Q  110 cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt 209  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| |||||| |||||||||| ||    
T  17684023 cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt 17684122  T
Q  210 caaactaaataccgaatgccgcaaaattccattcactttcttcc 253  Q
    ||||||||  ||||| ||||||||||  ||||||||||||||||    
T  17684123 caaactaatcaccgagtgccgcaaaaccccattcactttcttcc 17684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
Q  7 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 106  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  107 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac 170  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac 36160065  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 17684198 - 17684249
Alignment:
Q  285 aggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 336  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  17684198 aggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcg 17684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 10559992 - 10559739
Alignment:
Q  4 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||||||||| ||     
T  10559992 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaagaaaccacct 10559893  T
Q  104 taaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccac 203  Q
    | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||   | |||||||| |||| | || ||||    
T  10559892 ttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcagctgccccac 10559793  T
Q  204 cttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt 257  Q
    ||| ||||||||||  ||||| ||||||| ||  ||||||||||||||||||||    
T  10559792 ctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 10558490 - 10558434
Alignment:
Q  280 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 336  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 10558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 335
Target Start/End: Original strand, 26741546 - 26741878
Alignment:
Q  3 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| |||||||||| ||    
T  26741546 cacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaagaaaccacc 26741645  T
Q  103 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 202  Q
    || || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||||||| ||||| |||  |||    
T  26741646 cttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcagccgatcca 26741745  T
Q  203 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 302  Q
    |||| ||||||||||  ||||  | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| || ||||| ||||    
T  26741746 cctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgccactctctt 26741845  T
Q  303 aaccttctttcttgtcgaagaaataacaccagc 335  Q
    ||||||||| || | ||| ||||||||||||||    
T  26741846 aaccttcttcctagccgatgaaataacaccagc 26741878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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