View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3668_low_1 (Length: 482)

Name: NF3668_low_1
Description: NF3668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3668_low_1
NF3668_low_1
[»] chr5 (10 HSPs)
chr5 (11-467)||(39576034-39576490)
chr5 (14-467)||(39572028-39572481)
chr5 (229-324)||(2326514-2326609)
chr5 (71-133)||(4100468-4100530)
chr5 (49-133)||(2326343-2326427)
chr5 (226-331)||(3561686-3561791)
chr5 (71-133)||(4146517-4146579)
chr5 (356-444)||(4145567-4145655)
chr5 (71-129)||(225362-225420)
chr5 (78-193)||(3561541-3561653)
[»] chr1 (4 HSPs)
chr1 (55-440)||(46672088-46672473)
chr1 (238-431)||(5054375-5054569)
chr1 (56-430)||(46445704-46446078)
chr1 (55-129)||(5054203-5054277)
[»] chr8 (10 HSPs)
chr8 (49-326)||(9841801-9842075)
chr8 (237-326)||(9860447-9860536)
chr8 (357-443)||(9846721-9846805)
chr8 (49-124)||(9860641-9860716)
chr8 (228-310)||(9902767-9902849)
chr8 (71-136)||(27360976-27361041)
chr8 (235-325)||(9846852-9846942)
chr8 (361-433)||(9902656-9902728)
chr8 (85-193)||(9902878-9902986)
chr8 (359-442)||(9841685-9841768)
[»] chr3 (4 HSPs)
chr3 (251-441)||(49385962-49386151)
chr3 (235-429)||(7256554-7256745)
chr3 (71-136)||(7256838-7256903)
chr3 (229-312)||(49385850-49385934)
[»] scaffold0658 (1 HSPs)
scaffold0658 (71-136)||(2856-2921)
[»] chr6 (3 HSPs)
chr6 (71-136)||(112644-112709)
chr6 (358-427)||(112940-113009)
chr6 (226-326)||(112805-112905)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 39576490 - 39576034
Alignment:
Q  11 cacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaat 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39576490 cacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattctcctgaat 39576391  T
Q  111 caaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacg 210  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39576390 caaaatccaaagtgtagatttgatatcttttctgaaaatgatctttatacacaatgcaagaaagacaatttcccatccataaagacttcagaggcggacg 39576291  T
Q  211 accaagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatca 310  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576290 accaagcgttgacacagggggaaatgaatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatca 39576191  T
Q  311 ttgcctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576190 ttgcctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtg 39576091  T
Q  411 catagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaact 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576090 catagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaact 39576034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 467
Target Start/End: Complemental strand, 39572481 - 39572028
Alignment:
Q  14 agacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaa 113  Q
    |||| ||||||| || | ||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||||    
T  39572481 agacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaa 39572382  T
Q  114 aatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgacc 213  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||| || |||| ||||||||||| |||||| ||| ||||||||    
T  39572381 aatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagcgattttccatccataaaaacttcacaggtggacgacc 39572282  T
Q  214 aagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattg 313  Q
    | || |  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  39572281 acgcatcaacacaggtggaaatggatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccaataaagatcatta 39572182  T
Q  314 cctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcat 413  Q
    |||||||||||||||||| ||| |||||||||| ||  || ||| |||||||||||||||||||||| ||| |||||||||| ||||||||| ||  |||    
T  39572181 cctccactataaattggttgcttaaaagagaactcccaaaagggtgcttcttttctagctatttcttaccatgagttatcaactccaattcttagaacat 39572082  T
Q  414 agaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaact 467  Q
    ||||||||||||||||| |||||||||||| | ||||||||  |||||||||||    
T  39572081 agaaaacataccaaaaaacacctgaaaccatagggataactttagagaacaact 39572028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 2326514 - 2326609
Alignment:
Q  229 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactata 324  Q
    ||||| |||||||||||| |  ||||||||||| ||||||| |||||||||||||||||  | |||||||||||||||||||||| ||||||||||    
T  2326514 gggaagtggatattctcgcataataatttccttgtcaacattcatcacaatcacttccttttctgttatccagtaaagatcattgtctccactata 2326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 4100468 - 4100530
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4100468 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttga 4100530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 2326343 - 2326427
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    ||||| || ||| |||||||  || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2326343 accacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttga 2326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 3561686 - 3561791
Alignment:
Q  226 agggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 325  Q
    |||||||| |||||||||||  || |||| |||||| |||||||||||||||||||||   || |||  ||||||||||||||||||||| |||||||||    
T  3561686 agggggaagtggatattctctgacaataacttccttgtcaacatccatcacaatcactgattcctttagtatccagtaaagatcattgccaccactataa 3561785  T
Q  326 attggt 331  Q
    | ||||    
T  3561786 actggt 3561791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 4146579 - 4146517
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  4146579 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 4146517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 444
Target Start/End: Complemental strand, 4145655 - 4145567
Alignment:
Q  356 ggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaaccac 444  Q
    ||||||||||||| |||||| |||||||| ||| |||| | ||||||||||||  ||||||| ||||||||| ||||||| ||||||||    
T  4145655 ggagcttcttttcaagctatctctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaaccac 4145567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 225420 - 225362
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||| || ||||||||    
T  225420 aaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 3561541 - 3561653
Alignment:
Q  78 ccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggca 177  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||| |||||| || | ||   ||   |||||| || || |||||||||||||      
T  3561541 ccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtttt---aatgggatcttcatgcacaatgcaagaaaggtg 3561637  T
Q  178 atttcccatccataaa 193  Q
    ||||||||||||||||    
T  3561638 atttcccatccataaa 3561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 55 - 440
Target Start/End: Original strand, 46672088 - 46672473
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatct 154  Q
    |||||| |||||||  ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||   |  | ||  | ||||    
T  46672088 agcagccacataatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatct 46672187  T
Q  155 ttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataa 254  Q
    || |||| |||||||||||||  |||||||||| ||||| | |   ||     || | || || |   || || ||||| ||||||||||| ||| ||||    
T  46672188 ttgtacacaatgcaagaaaggtgatttcccatcaataaaaaatctggaactttaccaacatgcatcagcatagtgggaagtggatattctcatacaataa 46672287  T
Q  255 tttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgc--tgaaaagagaacccctta 352  Q
    ||||  ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| || | ||  || |||  |  ||  |||    
T  46672288 tttctctatcaacatccatcacaattacttcatcatttgttattcagtaaagatcattgcctccactataaagtgattgccatggaaaatg--ccgatta 46672385  T
Q  353 aggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaa 440  Q
     || ||||||||||||||||||| |||||||| || ||||| |||| |||||| ||  |||||||||||  |||||||||||| ||||    
T  46672386 tggcgagcttcttttctagctatctctttccatgaattatctattctaattctcagcacatagaaaacacgccaaaaagcacccgaaa 46672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 238 - 431
Target Start/End: Original strand, 5054375 - 5054569
Alignment:
Q  238 atattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctga 337  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||| |  | || ||    
T  5054375 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatcattgcctccactataaagtatttgccga 5054474  T
Q  338 aaagagaaccccttaaggggagc-ttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaag 431  Q
    ||| |   ||| | ||||||||| || |||||||||||| || |||||||||||||| ||||  ||||| ||  |||||||||||||||| ||||    
T  5054475 aaaaaattcccttgaaggggagcttttttttctagctatctcgttccacgagttatctattcttattcttagcacatagaaaacataccagaaag 5054569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 430
Target Start/End: Complemental strand, 46446078 - 46445704
Alignment:
Q  56 gcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctt 155  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||   |  | ||  | |||||    
T  46446078 gcagccacataatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatatgcttcataaatttcatctt 46445979  T
Q  156 tatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataat 255  Q
    ||||   ||||||||||||   || ||||||| ||||| |  |  ||    ||  |||  || ||| ||||  ||||| ||||||||||  ||| |||||    
T  46445978 tatatgcaatgcaagaaagatgatctcccatcgataaaaatattggaactcgatcaccgggcattggcacattgggaagtggatattcttctacaataat 46445879  T
Q  256 ttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctgaaaagagaaccccttaagg 355  Q
    |||  ||||||||||||| ||||| |  || ||| |||||||||||||||||||||||||||||||||||| |||| ||     | | ||||  | | |     
T  46445878 ttctctatcaacatccattacaattatatcatcaattgttatccagtaaagatcattgcctccactataaagtggttgccatgtaaaaaaccaatcacga 46445779  T
Q  356 ggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaa 430  Q
    |||||||||||||||||||| |||||||| || ||||| ||||||||||| |   ||||||||||||||||||||    
T  46445778 ggagcttcttttctagctatctctttccatgaattatctattccaattcttaacacatagaaaacataccaaaaa 46445704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 5054203 - 5054277
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  5054203 agcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagat 5054277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 49 - 326
Target Start/End: Complemental strand, 9842075 - 9841801
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaa 148  Q
    ||||| |||||  |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || | |   ||    
T  9842075 accacaagcagacacataatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactat---aa 9841979  T
Q  149 tgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgta 248  Q
      |||||||  |  |||||||||||||| ||||||||||||||||    ||  | |||||| |  | || |      || ||||| ||||||||||||||    
T  9841978 gtatctttagtcgcaatgcaagaaaggcgatttcccatccataaaagtatcgcaagcggaccaaaacgcatatttctagagggaagtggatattctcgta 9841879  T
Q  249 cgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaa 326  Q
    | ||| ||||||| ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  9841878 caatagtttccttgtcaacatccatcacaatcactttgtcatatgttatccagtaaagatcattgcctccactataaa 9841801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 9860536 - 9860447
Alignment:
Q  237 gatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaa 326  Q
    ||||||||||||  ||||||| | | ||||||||||| |||||||||||||  ||||||||||| |||| ||||||||||||||||||||    
T  9860536 gatattctcgtataataatttgcctgtcaacatccatgacaatcacttccttttttgttatccaataaatatcattgcctccactataaa 9860447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 443
Target Start/End: Complemental strand, 9846805 - 9846721
Alignment:
Q  357 gagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaacca 443  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||||||||| |  ||| ||||||||||||| ||||||||||||||||    
T  9846805 gagcttcttttctagttatctctttccatgagttatctattccaattctta--gcacagaaaacataccagaaagcacctgaaacca 9846721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 9860716 - 9860641
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatg 124  Q
    ||||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9860716 accacaagcagacacataatcaaaaggtcccatctcatgataaagagaccattttcctgaatcatgatccaaaatg 9860641  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 9902849 - 9902767
Alignment:
Q  228 ggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatca 310  Q
    |||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||| |  || | ||||||||||||||||    
T  9902849 ggggaagtggatattctcgtagaataatttccttgtcaacatccatcacaatcacttctttgttcgatatccagtaaagatca 9902767  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 27361041 - 27360976
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  27361041 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 27360976  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 9846942 - 9846852
Alignment:
Q  235 tggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 325  Q
    |||||| |||||||   |||||||||| |||||||| | |||||||||||||| | |||  ||||| ||||||||||||||||||||||||    
T  9846942 tggataatctcgtaaagtaatttccttgtcaacatcgaacacaatcacttccttaattgacatccaataaagatcattgcctccactataa 9846852  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 9902728 - 9902656
Alignment:
Q  361 ttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagca 433  Q
    ||||||||||||||| ||| |||| |||||||| ||||| ||||| ||   ||||||||||||||||||||||    
T  9902728 ttcttttctagctatctctctccatgagttatctattccgattcttagcatatagaaaacataccaaaaagca 9902656  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 9902986 - 9902878
Alignment:
Q  85 atgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttccc 184  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| |  ||  | || | |  | ||||||||  || |||||||||||||| |||| ||    
T  9902986 atgataaaaagaccattttcttgaatcaaaatccaaaatgtagatattgtaagttttataatgaggatctttacgcacaatgcaagaaaggcgattttcc 9902887  T
Q  185 atccataaa 193  Q
    |||||||||    
T  9902886 atccataaa 9902878  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 9841768 - 9841685
Alignment:
Q  359 gcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaacc 442  Q
    ||||||||| ||||||| |||||||| |  ||||| ||||| ||||| ||  ||||||||||||||||| ||||||| ||||||    
T  9841768 gcttcttttttagctatctctttccatgcattatctattccgattctcagcacatagaaaacataccaacaagcacccgaaacc 9841685  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 251 - 441
Target Start/End: Original strand, 49385962 - 49386151
Alignment:
Q  251 ataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctgaaaagagaacccct 350  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||| |||||||||| || ||||  ||  ||  |  |||  |    
T  49385962 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccagtaaagatcatttcctccactat-aagtggtttctataacaaacaccaat 49386060  T
Q  351 taaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaac 441  Q
    |||||||||||||||||||| |||| |||||||| |||||||  ||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  49386061 taaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 49386151  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 429
Target Start/End: Complemental strand, 7256745 - 7256554
Alignment:
Q  235 tggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgc 334  Q
    |||||| ||||| || ||| ||||||| |||||||| |||||||||||||| ||  ||||||| ||||||||||||||||||||| |||||| |  |       
T  7256745 tggataatctcgaacaatagtttccttttcaacatctatcacaatcacttcatccattgttattcagtaaagatcattgcctccattataaagtattt-- 7256648  T
Q  335 tgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaa 429  Q
    || | | | ||    ||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||| ||||| |||||||||||||    
T  7256647 tgcatataaaatgt-ttacggggagcttcttttctagctatttctttccatgagttatctactccaattcttagtacatagtaaacataccaaaa 7256554  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 7256903 - 7256838
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7256903 aaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttgatat 7256838  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 49385934 - 49385850
Alignment:
Q  229 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctc-atttgttatccagtaaagatcatt 312  Q
    ||||| || ||||||| |||| |||||||||||||||| || ||||||||||||||  ||  ||||||||| |||||||||||||    
T  49385934 gggaagtgcatattcttgtacaataatttccttatcaatattcatcacaatcactttttctctttgttatctagtaaagatcatt 49385850  T

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Target: scaffold0658 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 2856 - 2921
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  2856 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 2921  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 112644 - 112709
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||| ||||||||||||||||||| |||||||||| |||| |||||||||   ||||||||||||    
T  112644 aaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaagcatagatttgatat 112709  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 112940 - 113009
Alignment:
Q  358 agcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaa 427  Q
    ||||| |||||||||||| |||||||| | |||||||| ||||||| | ||  | |||||||||||||||    
T  112940 agctttttttctagctatctctttccatgtgttatcaactccaattgttaggacgtagaaaacataccaa 113009  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 112805 - 112905
Alignment:
Q  226 agggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 325  Q
    |||||| | |||||| |||| ||  ||||||||| | ||||||||||||||| ||||| | ||  |||||||||| |||| ||||||  ||||| |||||    
T  112805 aggggggagtggatactctcttataataatttccctgtcaacatccatcacagtcactccatcccttgttatccaataaatatcattttctccattataa 112904  T
Q  326 a 326  Q
    |    
T  112905 a 112905  T

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