View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_high_20 (Length: 221)
Name: NF3669_high_20
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37620077 - 37619856
Alignment:
| Q |
1 |
aaaaaggcaagaactgatcaagtaaatggataaacctttgtagacttagaaaaatagacagaaggaaa-caagtctttgctcgacattacaacaaagaga |
99 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37620077 |
aaaaatgcaagaactgatcaagtaaatggataagcctttgtagacttagaaaaataaacagaaggaaaacaagtctttgctcgacattacaacaaagaga |
37619978 |
T |
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| Q |
100 |
tccatgtcgagacacaacataaaaagcacgtgttgaagaccaaatttaggtttagaatacatggcaaacaaacatgtatgccattagctgttaggatact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37619977 |
tccatgtcgagacacaacataaaaagcacgtgttgaagaccaaatttaggtttagaatacatggcaaacaaacatgtatgccattagctgttaggatact |
37619878 |
T |
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| Q |
200 |
tctctataaggtttgaagactt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
37619877 |
tctctataaggtttgaagactt |
37619856 |
T |
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