View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_high_3 (Length: 460)
Name: NF3669_high_3
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 33224898 - 33224461
Alignment:
| Q |
16 |
ataatatagaaatttattaaaataacttaccatttcacaattgacaacccctttttgcattactattacaacccccacccagcatgcgagacattaatct |
115 |
Q |
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| T |
33224898 |
ataatatagaaatttattaaaataacttaccatttcacaattgacaacccctttttgcattactattacaacccccacccagcatgcgagacattaatct |
33224799 |
T |
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| Q |
116 |
ttcttgtaatttgctcacttattttgcataattttttaatatgtt-agtcattattatactctttcaatgtaaaatgtcggtgtatatattttgctcact |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224798 |
ttcttgtaattttctcacttattttgcataattttttaatatgtttagtcattattatactctttcaatgtaaaatgtcggtgtatatattttgctcact |
33224699 |
T |
|
| Q |
215 |
ttctnnnnnnntctgcaatgtatatctataccttcatttgcccatttctatttagatgaacaaaaaccgtccaatcaatacatagaatagaaggcacacc |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224698 |
ttctaaaaaaatctgcaatgtatatctataccttcatttgcccatttctatttagatgaacaaaaaccgtccaatcaatacatagaatagaaggcacacc |
33224599 |
T |
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| Q |
315 |
agaaagaagattaaaaagtatgtgttctttacttttgttaggatataatagtgattagtgacaccttaaactatatttataggctttccatctttatcct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224598 |
agaaagaagattaaaaagtatgtgttctttacttttgttaggatataatagtgattagtgacaccttaaactatatttataggctttccatctttatcct |
33224499 |
T |
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| Q |
415 |
attgcactctgtgtccatttgatactagaagtataatc |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33224498 |
attgcactctgtgtccatttgatactagaagtataatc |
33224461 |
T |
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