View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3669_high_5 (Length: 440)
Name: NF3669_high_5
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 41841969 - 41842249
Alignment:
| Q |
16 |
gatacgaagctactggagccattaggaggaaatgaggaatggtataagatcttcatcctttcactttgagttcctctcattttcgctaaataatcttcat |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41841969 |
gatacgaagctactggagccataaggaggaaatgaggaatggtataagatcttcatcctttcactttgagttcctctcattttagctaaataatcttcat |
41842068 |
T |
|
| Q |
116 |
cgtaatcctcttctctaagaagaacatgtgaaagaatcacactcgatcccatagcaaactttcccgaatagtctttctcggaatcaatcaccattctgtg |
215 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41842069 |
agtaattctcttctctaagaagaagatgtgaaagaatcacactcgatcccatagcaaactttcccgaatagtctttctcggaatcaatccccattctgtg |
41842168 |
T |
|
| Q |
216 |
caatgtagcaccattttcatggtgcaaaatccgacatatgcacagtaaccagacaaaataagtttctaaaacagtgaacaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41842169 |
caatgtagcaccattttcatggtgcaaaatccgacatatgcacagtaaccagacaaaataagtttctaaaacagtgaacaa |
41842249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 41842269 - 41842402
Alignment:
| Q |
289 |
gtgaacaactaacaataactcaagaaatcttgttgaggatgaaatggtgctattgaaatcaacttttttctattctgttaggctgtttcaacataaagtt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41842269 |
gtgaacaactaacaataactcaagaaatcttgttgaggatgaaatggtgctattgaaatcaacttttttctattttgttaggctgtttcaacataaagtt |
41842368 |
T |
|
| Q |
389 |
aaaggaaatcaatctccgcaagtttctttacttt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41842369 |
aaaggaaatcaatctccgcaagtttctttacttt |
41842402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 42090198 - 42090105
Alignment:
| Q |
289 |
gtgaacaactaacaataactcaagaaatcttgttgaggatgaaatggtgctattgaaatcaacttttttctattctgttaggctgtttcaacata |
383 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||||| ||| | |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
42090198 |
gtgaacaactaataataacccaagaaaacttgttgaggatgaaatggtgatatgggaatcaact-ttttctattctgttgggctgtttcaacata |
42090105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 290
Target Start/End: Complemental strand, 42090453 - 42090224
Alignment:
| Q |
57 |
gtataagatcttcatcctttcactttgagttcctctcattttcgctaaataatcttcatcgtaatcctcttctctaagaagaacatgtgaaagaatcaca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| |||||||| | || ||||| ||||| |||||||| | | ||| |||||||| |
|
|
| T |
42090453 |
gtataagatcttcatcctttcactttgagtacctcctattttagctaaata---tgcacagtaattctcttttctaagaacca---gcgaatgaatcaca |
42090360 |
T |
|
| Q |
157 |
ctcgatcccatagcaaactttcccgaatagtctttctcggaatcaatcaccattctgtgcaatgtagcaccattttcatggtgcaaaatccgacatatg- |
255 |
Q |
| |
|
|| | | |||||||||||||||||||| |||||||||||||||||| | | | | |||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
42090359 |
ctgcagtctatagcaaactttcccgaatactctttctcggaatcaatccctactgttcgcaatgtagcacaattttcatggtgtcaaatctaacatatgt |
42090260 |
T |
|
| Q |
256 |
-cacagtaaccagacaaaataagtttctaaaacagt |
290 |
Q |
| |
|
||||||||| ||| || |||||||||||||||| |
|
|
| T |
42090259 |
tcacagtaacaagatgaagcaagtttctaaaacagt |
42090224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 11653021 - 11653154
Alignment:
| Q |
289 |
gtgaacaactaacaataactcaagaaatcttgttgaggatgaaatggtgctattgaaatcaacttttttctattctgttaggctgtttcaacataaagtt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11653021 |
gtgaacaactaacaataactcaagaaatcttgttgaggatgaaacggtgctattgaaatcaacttttttctattctgttaggctgtttcaacgtaaagtt |
11653120 |
T |
|
| Q |
389 |
aaaggaaatcaatctccgcaagtttctttacttt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11653121 |
aaaggaaatcaatctccgcaagtttctttacttt |
11653154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University