View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_high_9 (Length: 329)
Name: NF3669_high_9
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 17393003 - 17392703
Alignment:
| Q |
11 |
cacagaaaatgatagttgcttatgcgagattgtgctgcgtgaaggtggaacaatcagaattttaagggtgcacgttgttaggaaggaatgaaccaaactg |
110 |
Q |
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| T |
17393003 |
cacagaaaatgatagttgcttatgcgagattgtgctgcgtgaagatggaacaatcagaattttaagggtgcacgttgttaggaaggaatgaaccaaactg |
17392904 |
T |
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| Q |
111 |
caata-aacagtacagatgttaacttgaaacttctaagatggaacttgtttatttataaaacatttttatcaagtgtgcttttataacttctaaaatggt |
209 |
Q |
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| T |
17392903 |
caatacaatagtactgatgttaacttgaaacttctaagatggaacttgtttatttataaaacatttttatcaagtgtgcttttataacttctaaaatggt |
17392804 |
T |
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| Q |
210 |
gtttgtaatgactatgatgaccatttttatgacttattgtataattatttagcttgcactgaccattacacaatcatttgtgtggttttacattggaaga |
309 |
Q |
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| T |
17392803 |
gtttgtaatgactatgatgaccatttttatgacttattgtataattatttagcttgcactgaccattacacaatcatttgtgtggttttacattggaaga |
17392704 |
T |
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| Q |
310 |
c |
310 |
Q |
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| T |
17392703 |
c |
17392703 |
T |
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