View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3669_low_1 (Length: 576)
Name: NF3669_low_1
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 2331704 - 2332085
Alignment:
| Q |
1 |
acaacaatgatcaccaccaataatggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccctgcacactattcgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2331704 |
acaacaatgatcaccaccaat---ggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccctacacactattcgc |
2331800 |
T |
|
| Q |
101 |
tcagttcttcacatgaatgtacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttattttgtaactaaagtta |
200 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331801 |
tcagtttttcacatgaatgcacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttattttgtaactaaagtta |
2331900 |
T |
|
| Q |
201 |
tgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaaggtaaaactagtaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331901 |
tgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaaggtaaaactagtaat |
2332000 |
T |
|
| Q |
301 |
acaatatat-gnnnnnnnttcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
384 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332001 |
acaatatatataaaaaaattcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
2332085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 2332167 - 2332256
Alignment:
| Q |
467 |
ttatatacgcaggccatcatcagaagacgacgaaataaaatttctggtttgaatgtggaaaacatatggtgcacgaatgcaagcactctcaa |
558 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2332167 |
ttatacacgcaggccatcatcagaagacggcgaaataaaatttctggtttgaatgtggaaaac--atggtgcacgaatgcaagcactctcaa |
2332256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University