View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_15 (Length: 251)
Name: NF3669_low_15
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 51855854 - 51856097
Alignment:
| Q |
1 |
tacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagtaaagttaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855854 |
tacacaaatctggcagatgaacttcccttaccagccttagggccaaaggctattctccaataacataattctaacattttatattcaagtaaagttaagt |
51855953 |
T |
|
| Q |
101 |
caacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtcc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855954 |
caacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtcc |
51856053 |
T |
|
| Q |
201 |
aaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
244 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
51856054 |
aaaacctcagcgtcaaggtccacctcacatcatgttcttctcac |
51856097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35042631 - 35042588
Alignment:
| Q |
1 |
tacacaaatctggcagatgaacttcccttaccagccttagggcc |
44 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35042631 |
tacacaaatctggcagatgaacttctcctaccagccttagggcc |
35042588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 8945041 - 8945283
Alignment:
| Q |
1 |
tacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagtaaagttaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945041 |
tacacaaatctggcagatgaacttcccttaccagccttaggggcaaaggctattctccaataacataattctaacattttatattcaagtaaagttaagt |
8945140 |
T |
|
| Q |
101 |
caacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtcc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945141 |
caacatgaacaaacattttaaaaaaa-cattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtcc |
8945239 |
T |
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| Q |
201 |
aaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8945240 |
aaaacctcagcgtcaaggtcaacctcacattatgttcttctcac |
8945283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 24269829 - 24269886
Alignment:
| Q |
162 |
aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
220 |
Q |
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|||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
24269886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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