View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_16 (Length: 242)
Name: NF3669_low_16
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 49157148 - 49157273
Alignment:
| Q |
100 |
ggattaagagaagctcaaatttgtgtgaaatgtgattaattaagccgcattttccttagcaatcttctctgcctttgcaatgacttcatcaataccacca |
199 |
Q |
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| T |
49157148 |
ggattaagagaagctcaaatttgtgtgaaatgtgattaattaagccgcattttccttagcaatcttctctgcctttgcaatgacttcatcaataccacca |
49157247 |
T |
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| Q |
200 |
accatgtaaaatgcttgttctgaaag |
225 |
Q |
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| T |
49157248 |
accatgtaaaatgcttgttctgaaag |
49157273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 49152212 - 49152286
Alignment:
| Q |
151 |
ttccttagcaatcttctctgcctttgcaatgacttcatcaataccaccaaccatgtaaaatgcttgttctgaaag |
225 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| |
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| T |
49152212 |
ttccttggcaatcttctctgcctttgcaatgacttcatcaataccaccgaccatataaaatgcctgctctgaaag |
49152286 |
T |
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