View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3669_low_19 (Length: 236)
Name: NF3669_low_19
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 34290478 - 34290695
Alignment:
| Q |
4 |
atcattcccttgacctcatggtgattaggtgtataacatatctctttcaaattctgatggtttttcaaagacaatgaatggatttgtgtaaaatcattgc |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
34290478 |
atcattcccttgacctcatggttattaggtgtataacacatctctttcaaattctgaagttttttaaaagacaatgaatggatttgtggaaagtcattgc |
34290577 |
T |
|
| Q |
104 |
aacgaacactacaatctatcagatgctggagatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgccat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34290578 |
aacgaacactacaatctatcagatgctggagatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgtcag |
34290677 |
T |
|
| Q |
204 |
aacatttttcaagctttt |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34290678 |
aacatttttcaagctttt |
34290695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 34553288 - 34553505
Alignment:
| Q |
4 |
atcattcccttgacctcatggtgattaggtgtataacatatctctttcaaattctgatggtttttcaaagacaatgaatggatttgtgtaaaatcattgc |
103 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
34553288 |
atcattcccttgacctcatggttattatgtgtataacacatctctttcaaattctgaagttttttcaaagacaatgaatggatttgtggaaagtcattgc |
34553387 |
T |
|
| Q |
104 |
aacgaacactacaatctatcagatgctggagatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgccat |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
34553388 |
aacgaacactacaatctatcagatgttggagatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcaggtgacatttgtggcat |
34553487 |
T |
|
| Q |
204 |
aacatttttcaagctttt |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34553488 |
aacatttttcaagctttt |
34553505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 34565088 - 34565171
Alignment:
| Q |
133 |
agatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgccataacatttttcaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
34565088 |
agatctggacatgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaag |
34565171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 131511 - 131296
Alignment:
| Q |
1 |
atcatcattcccttgacctcatggtgattaggtgtataacatatctctttcaaattctgatggtttttcaaagacaatgaatggatttgtgtaaaatcat |
100 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||| ||| || |
|
|
| T |
131511 |
atcatcaatcccttgatttcatggtaattaggtgtataacacatctctttaaaattctgaagatttttcaaagacaatgacctaatttgtgaaaagccac |
131412 |
T |
|
| Q |
101 |
tgcaacgaacactacaatctatcagatgctggagatcaggacatgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgc |
200 |
Q |
| |
|
||||| || | |||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
131411 |
tgcaatgagtagtacaatctatcaaatactccagatcaggacatgaatcaaccctcaaatctttcaagtatggaattggacaatcatgtgacaattgtct |
131312 |
T |
|
| Q |
201 |
cataacatttttcaag |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
131311 |
cataacatttttcaag |
131296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 15894685 - 15894823
Alignment:
| Q |
40 |
catatctctttcaaattctgatggtttttcaaagacaatgaatggatttgtgtaaaatcattgcaacgaacactacaatctatcagatgctggagatcag |
139 |
Q |
| |
|
||||||| ||| ||||||| | | ||||| ||||||||||| || ||||||| || |||||||| ||||| | |||||||| |||| || | || || |
|
|
| T |
15894685 |
catatctgtttgaaattctcaagtttttttaaagacaatgactgaatttgtgggaagccattgcaatgaacagtgcaatctatgagatactccaaattag |
15894784 |
T |
|
| Q |
140 |
gacatgaatcaacccttaaatctttcaagtatggaattg |
178 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15894785 |
ggcatgagacaacccttaaatctttcaagtatggaattg |
15894823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University