View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_20 (Length: 233)
Name: NF3669_low_20
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_20 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 1391 - 1593
Alignment:
| Q |
16 |
taggaaaattatgttgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1391 |
taggaaaattatgtcgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
1490 |
T |
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| Q |
116 |
ggcttctagcaacaagattgggcactttgttgatttgtggtttgctatgtctcaataagaaatggccatttatcaacaacttctcaagcttgtctttgga |
215 |
Q |
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| T |
1491 |
ggcttctagcaacaaggttgggcactttgttgatttgtggtttgctatgtctcagtaagaaatggccatttatcaacaacttctcaagcttgtctttgga |
1590 |
T |
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| Q |
216 |
taa |
218 |
Q |
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||| |
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| T |
1591 |
taa |
1593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 4409 - 4232
Alignment:
| Q |
41 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaagattgggcac |
140 |
Q |
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|||| |||||||||||||||||| | | |||||| | ||||| |||||||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
4409 |
aatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
4310 |
T |
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| Q |
141 |
tttgttgatttgtggtttgctatgtctcaataagaaatggccatttatcaacaacttctcaagcttgtctttggataa |
218 |
Q |
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| T |
4309 |
tttattgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcttgtctttggataa |
4232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 31331477 - 31331679
Alignment:
| Q |
16 |
taggaaaattatgttgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331477 |
taggaaaattatgtcgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
31331576 |
T |
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| Q |
116 |
ggcttctagcaacaagattgggcactttgttgatttgtggtttgctatgtctcaataagaaatggccatttatcaacaacttctcaagcttgtctttgga |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331577 |
ggcttctagcaacaaggttgggcactttgttgatttgtggtttgctatgtctcagtaagaaatggccatttatcaacaacttctcaagcttgtctttgga |
31331676 |
T |
|
| Q |
216 |
taa |
218 |
Q |
| |
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||| |
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| T |
31331677 |
taa |
31331679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 31319261 - 31319438
Alignment:
| Q |
41 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaagattgggcac |
140 |
Q |
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|||| |||||||||||||||||| | | |||||| | ||||| |||||||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
31319261 |
aatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
31319360 |
T |
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| Q |
141 |
tttgttgatttgtggtttgctatgtctcaataagaaatggccatttatcaacaacttctcaagcttgtctttggataa |
218 |
Q |
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||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319361 |
tttattgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcttgtctttggataa |
31319438 |
T |
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