View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_3 (Length: 467)
Name: NF3669_low_3
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 37212935 - 37213392
Alignment:
| Q |
18 |
gcaacaagttgaagttagtgttaaatttaaaataacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcctaagcat |
117 |
Q |
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| T |
37212935 |
gcaacaagttgaagttagtgttaaatttaaaataacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcctaagcat |
37213034 |
T |
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| Q |
118 |
atacattgatgaagaggttttccattgttataaacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacacttacttc |
217 |
Q |
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| T |
37213035 |
atacattgatgaagaggttttccattgttataaacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacacttacttc |
37213134 |
T |
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| Q |
218 |
ctactgggagtaaaaatgagaagatcacttttcatgtgtggtgaacnnnnnnntattacttttttagttattaatattggtcaattaaaattctatggtc |
317 |
Q |
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| T |
37213135 |
ctactgtgagtaaaaatgagaagatcacttttcatgtgtggtgaacaaaaagatgttacttttttagttattaatattggtcaattaaaattctatggtc |
37213234 |
T |
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| Q |
318 |
catcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtca-----------------acttttctataaggcaaaatcatcacc |
400 |
Q |
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| T |
37213235 |
catcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtcaacttttaaataatttatacttttctataaggcaaaatcatcacc |
37213334 |
T |
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| Q |
401 |
aaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatgc |
458 |
Q |
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| T |
37213335 |
aaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatgc |
37213392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 37203774 - 37203829
Alignment:
| Q |
110 |
ctaagcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgtt |
165 |
Q |
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| T |
37203774 |
ctaagcatatacattgataaagaggttttgctttgttataaacaaccaaaagtgtt |
37203829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 37196070 - 37196127
Alignment:
| Q |
113 |
agcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgttctatt |
170 |
Q |
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| T |
37196070 |
agcatatgcattgatgaagaggttttgctttgctataaacaaccaaaagtgttttatt |
37196127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 7528668 - 7528755
Alignment:
| Q |
18 |
gcaacaagttgaagttagtgttaaatttaaaataacaa---gacagataatattttttagagaaaccgaggaaacatgtcattgtacat |
103 |
Q |
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| T |
7528668 |
gcaacaagttgaagttaggattaaatctaaaacaacaacaagacaga-attttattttagagaaactcaggaaacatgtcattgtacat |
7528755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 413145 - 413109
Alignment:
| Q |
67 |
ttttttagagaaaccgaggaaacatgtcattgtacat |
103 |
Q |
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| T |
413145 |
ttttttagagaaacctaagaaacatgtcattgtacat |
413109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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