View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_5 (Length: 444)
Name: NF3669_low_5
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 61 - 433
Target Start/End: Complemental strand, 40334501 - 40334129
Alignment:
| Q |
61 |
gaaacattcataatctgctctaacgtaatgcttagtggataagccaagcctaatatcaaactttaacggtacatcctaatttaggaaaagaaagagtgtt |
160 |
Q |
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| T |
40334501 |
gaaacattcataatctgctctaacgtaatgcttagtggataagccaagcctaatatcaaactttaacggtacatcctaatttaggaaaagaaagagtgtt |
40334402 |
T |
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| Q |
161 |
gatatcgaaatcaatttaaattaaaacgtaaattgatccaaagtcgaaaacctaacaaaatatattatcaaatatttttggatctcgctttatgaaaacc |
260 |
Q |
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| T |
40334401 |
gatatcgaaatcaatttaaattaaaacgtaaattgatccaaagtcgaaaacctaacaaaatatattatcaaatatttttggatctcgctttatgaaaacc |
40334302 |
T |
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| Q |
261 |
gatcgatttatatcatatttcatattagtttgttcaaagttaaattaaaacgattttatttaacacnnnnnnnaagggagattttatgtaatacttattt |
360 |
Q |
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| T |
40334301 |
gatcgagttatatcatattttatattagtttgttcaaagttaaattaaaacgattttatttaacactttttttaagggagattttatgtaatacttattt |
40334202 |
T |
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| Q |
361 |
ttgttattagagtaagaagaattgcactaatannnnnnnnacaatacttcttagttttttgcttcaaagtata |
433 |
Q |
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| T |
40334201 |
ttgttattagagtaagaagaattgcactaatattttttttacaatacttcttagttttttgcttcaaagtata |
40334129 |
T |
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