View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3669_low_8 (Length: 382)
Name: NF3669_low_8
Description: NF3669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3669_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 7620447 - 7620088
Alignment:
| Q |
6 |
agcagcacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacg |
105 |
Q |
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| T |
7620447 |
agcaccacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggtcgagataggaacg |
7620348 |
T |
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| Q |
106 |
tgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
205 |
Q |
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| T |
7620347 |
tgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
7620248 |
T |
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| Q |
206 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7620247 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttcaactcttttggtcaatgtatgggccatcgctcgagacccaaaagaatgggttgat |
7620148 |
T |
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| Q |
306 |
ccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgtt |
365 |
Q |
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| T |
7620147 |
ccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgtt |
7620088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 7663445 - 7663804
Alignment:
| Q |
6 |
agcagcacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacg |
105 |
Q |
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| T |
7663445 |
agcaccacagaatgggccattgcagaattaattcgaaacccaagaattctagctaaagtccaagaagaattagacaaagttgtgggcagtgataggaacg |
7663544 |
T |
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| Q |
106 |
tgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
205 |
Q |
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| T |
7663545 |
tgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaactttccgcttgcatccatcaacacctctttccctcccacgaattgc |
7663644 |
T |
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| Q |
206 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgat |
305 |
Q |
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| T |
7663645 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttcaactcttttggttaatgtatgggccatcgctcgagacccaaaagaatgggttgat |
7663744 |
T |
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| Q |
306 |
ccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgtt |
365 |
Q |
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| T |
7663745 |
ccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgtt |
7663804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 7669154 - 7669501
Alignment:
| Q |
16 |
aatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacgtgaaagaaga |
115 |
Q |
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| T |
7669154 |
aatgggccattgcaaaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccgagataggaacgtgaaa--aga |
7669251 |
T |
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| Q |
116 |
cgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgcatctgaaagt |
215 |
Q |
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| T |
7669252 |
tgacatacctaacctaccttacctacaaacagtgataaaagaaacatttcgcttgcacccatcaacacctctttccctcccacgaattgcatctgaaagt |
7669351 |
T |
|
| Q |
216 |
tgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattagagt |
315 |
Q |
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| T |
7669352 |
tgtgagatttttgggtaccacgttccaaagagttcaactcttttggttaatgtatgggccattgctcgtgatccaaaagaatgggttgatccattaggat |
7669451 |
T |
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| Q |
316 |
tcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgtt |
365 |
Q |
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| T |
7669452 |
tcaaacctgaaaggttcttattaggtggtgagaagtgtgatgttgatgtt |
7669501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 7682692 - 7683042
Alignment:
| Q |
14 |
agaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacgtgaaagaa |
113 |
Q |
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||||||||| ||||||||||| | ||||| ||||||| | | ||||| || |||||||| || | ||||| || ||||| ||||||||||||||| |
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| T |
7682692 |
agaatgggctattgcagaattgctccgaaataaaagaatcatgacccaagtccaacaagaattagagaccgttgttggtcgagacaggaacgtgaaagaa |
7682791 |
T |
|
| Q |
114 |
gacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgcatctgaaa |
213 |
Q |
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| T |
7682792 |
gaggatttacctcaactaccttaccttcaagcagtggtaaaagaaacatttcgcttgcatccatctacacctctttccctcccgcgaattgcatctgaaa |
7682891 |
T |
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| Q |
214 |
gttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattaga |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| || | | || |||||||||||||||| | |
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| T |
7682892 |
gttgtgagatttttgggtaccacattccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaa |
7682991 |
T |
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| Q |
314 |
gttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgt |
364 |
Q |
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| T |
7682992 |
gttcaaacccgagaggttcttaccaggtggtgagaattgtgatgttgatgt |
7683042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 7683571 - 7683639
Alignment:
| Q |
295 |
aatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgt |
364 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
7683571 |
aatgggttgatc-attaatgttcaaacctgaaaggttcttactaggtggtgagaactgtaatgttgatgt |
7683639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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