View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3670_high_7 (Length: 206)
Name: NF3670_high_7
Description: NF3670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3670_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 18591611 - 18591782
Alignment:
| Q |
17 |
aaggtggtacggcctcacatcatttggcagagcatgttcaggcggggcagttttcatttgtggcacatgaaagtggtgacttcttagcatgtatctgggg |
116 |
Q |
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| T |
18591611 |
aaggaggtactgcctcacatcatttggcagagcatgttcagtcggggcagttttcatttgtggcacatgaaagtggtgacttcttagcatgtatctgggg |
18591710 |
T |
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| Q |
117 |
ggatgaaacacatgatcctcaagttctctctattgattttgagtggaaaactggtgtgaatgccaaggattg |
188 |
Q |
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| T |
18591711 |
ggatgaaacacatgatcctcaagttctctctattgattttgagtggaaaactggtgtgaatgccaaggattg |
18591782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 18586014 - 18586171
Alignment:
| Q |
34 |
catcatttggcagagcatgttcaggcggggcagttttcatttgtggcacatgaaagtggtgacttcttagcatgtatctggggggatgaaacacatgatc |
133 |
Q |
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| T |
18586014 |
catcatttagcaacgcatgttcagtcggggcagtttgcatttgtggcacatcaaagtggtgattacttggtgtgtttctttggggataaaacacatgatt |
18586113 |
T |
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| Q |
134 |
ctcaag---ttctctctattgattttgagtggaaaactggtgtgaatgccaaggattg |
188 |
Q |
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| T |
18586114 |
cccaagcaacactctctattgattttgtgtggaaaactggtgtggcagccaaggattg |
18586171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 18606944 - 18606973
Alignment:
| Q |
142 |
ctctctattgattttgagtggaaaactggt |
171 |
Q |
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| T |
18606944 |
ctctctattgattttgagtggaaaactggt |
18606973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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