View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3670_low_5 (Length: 251)
Name: NF3670_low_5
Description: NF3670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3670_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 6620628 - 6620402
Alignment:
| Q |
6 |
agtgacaagaacgttgttatttcccatatggaattggaacaaattcataaagtcggaaaatgtgctatgtaaaaggaagatgaaaaaataattcaggaag |
105 |
Q |
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| T |
6620628 |
agtgataagaacgttgttatttcccatatggaattggaacaaattcataaagtcggaaaatgtgctat---aaagccggatacaaaaataattcaggaag |
6620532 |
T |
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| Q |
106 |
aaattccattgcccccagtaacggagatgaaaaaatattggatgttgagtttgcaatgatgcactactttttcctaataacaatagccaataagagtatc |
205 |
Q |
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| T |
6620531 |
aaattccattgcccccagtaacggagatgaaaaaatattggatgttgagtttgcaatgatgcactactttttcctaataacaatagctaataagagtatc |
6620432 |
T |
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| Q |
206 |
aaatggaagttgtacctatatatatgatgt |
235 |
Q |
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| T |
6620431 |
aaatggaagttgtacctatatatatgatgt |
6620402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 36862048 - 36861995
Alignment:
| Q |
173 |
tttttcctaataacaatagccaataagagtatcaaatggaagttgtacctatat |
226 |
Q |
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| T |
36862048 |
tttttgctaatatcaatagccaataagagtatcaaatgcaagttgtacctatat |
36861995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 36850371 - 36850318
Alignment:
| Q |
173 |
tttttcctaataacaatagccaataagagtatcaaatggaagttgtacctatat |
226 |
Q |
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| T |
36850371 |
tttttgctaataataatagccaataagagtatcaaatgagagttgtacctatat |
36850318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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