View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3671_high_2 (Length: 415)

Name: NF3671_high_2
Description: NF3671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3671_high_2
NF3671_high_2
[»] chr8 (15 HSPs)
chr8 (151-376)||(23757291-23757517)
chr8 (181-378)||(22209993-22210178)
chr8 (149-306)||(158706-158863)
chr8 (143-352)||(13515519-13515719)
chr8 (143-352)||(13605052-13605252)
chr8 (149-246)||(22210222-22210319)
chr8 (149-263)||(15249554-15249668)
chr8 (149-214)||(33657589-33657654)
chr8 (309-352)||(194465-194508)
chr8 (309-352)||(309302-309345)
chr8 (149-212)||(10167723-10167786)
chr8 (147-178)||(40517158-40517189)
chr8 (144-192)||(13515296-13515344)
chr8 (144-192)||(13604829-13604877)
chr8 (144-200)||(35213376-35213432)
[»] chr4 (21 HSPs)
chr4 (150-378)||(41609030-41609260)
chr4 (144-378)||(41823536-41823759)
chr4 (149-329)||(17947192-17947372)
chr4 (149-263)||(51203223-51203336)
chr4 (238-378)||(5521305-5521443)
chr4 (149-213)||(5521525-5521589)
chr4 (135-222)||(2478923-2479010)
chr4 (149-224)||(36620917-36620992)
chr4 (149-243)||(31792626-31792720)
chr4 (146-207)||(11692150-11692211)
chr4 (297-378)||(11692287-11692368)
chr4 (175-252)||(33413853-33413930)
chr4 (149-214)||(38851976-38852041)
chr4 (136-212)||(23256947-23257023)
chr4 (140-212)||(31312802-31312874)
chr4 (149-212)||(27704722-27704785)
chr4 (307-378)||(31792728-31792799)
chr4 (147-208)||(3460861-3460922)
chr4 (140-201)||(41609352-41609413)
chr4 (149-205)||(40154667-40154723)
chr4 (140-200)||(53937746-53937806)
[»] chr7 (18 HSPs)
chr7 (149-366)||(33005001-33005219)
chr7 (140-329)||(18503560-18503749)
chr7 (309-378)||(25245321-25245390)
chr7 (149-378)||(33998716-33998934)
chr7 (242-328)||(2146994-2147079)
chr7 (282-378)||(33237042-33237138)
chr7 (144-206)||(30219055-30219117)
chr7 (149-267)||(25245014-25245133)
chr7 (140-191)||(33998566-33998617)
chr7 (149-211)||(15998800-15998862)
chr7 (184-273)||(26241481-26241570)
chr7 (149-212)||(2145927-2145990)
chr7 (149-224)||(37389781-37389856)
chr7 (158-212)||(2195364-2195417)
chr7 (149-211)||(14584930-14584992)
chr7 (144-204)||(18564272-18564332)
chr7 (149-193)||(29956932-29956976)
chr7 (164-212)||(41492351-41492399)
[»] chr6 (12 HSPs)
chr6 (151-378)||(1111876-1112101)
chr6 (148-346)||(4096668-4096854)
chr6 (149-273)||(3014504-3014629)
chr6 (240-375)||(26386335-26386470)
chr6 (308-378)||(3014418-3014488)
chr6 (308-378)||(31836764-31836834)
chr6 (149-212)||(27771679-27771742)
chr6 (138-212)||(12757228-12757302)
chr6 (149-210)||(31836895-31836956)
chr6 (149-194)||(34707559-34707604)
chr6 (142-194)||(12754020-12754072)
chr6 (297-345)||(12754188-12754236)
[»] chr2 (28 HSPs)
chr2 (181-378)||(24895480-24895677)
chr2 (143-366)||(28191602-28191824)
chr2 (149-378)||(12926509-12926738)
chr2 (173-273)||(578237-578337)
chr2 (143-376)||(7876305-7876531)
chr2 (298-378)||(30956178-30956258)
chr2 (149-367)||(1943886-1944104)
chr2 (149-273)||(35665547-35665671)
chr2 (142-207)||(35665322-35665387)
chr2 (183-342)||(25954640-25954800)
chr2 (321-378)||(578358-578415)
chr2 (149-212)||(24895755-24895818)
chr2 (149-263)||(28191442-28191556)
chr2 (158-273)||(653985-654101)
chr2 (144-272)||(35652052-35652178)
chr2 (134-366)||(43281719-43281953)
chr2 (149-213)||(578483-578546)
chr2 (164-264)||(37866532-37866632)
chr2 (149-204)||(10439830-10439885)
chr2 (149-212)||(27002996-27003059)
chr2 (149-207)||(17642627-17642685)
chr2 (142-192)||(26684179-26684229)
chr2 (297-359)||(35651979-35652040)
chr2 (142-212)||(36065705-36065775)
chr2 (149-211)||(40948872-40948934)
chr2 (150-207)||(7693570-7693627)
chr2 (139-200)||(36595544-36595605)
chr2 (149-193)||(12496620-12496664)
[»] scaffold0939 (1 HSPs)
scaffold0939 (149-305)||(636-792)
[»] chr1 (18 HSPs)
chr1 (149-339)||(27085956-27086147)
chr1 (149-376)||(33261693-33261918)
chr1 (149-376)||(33281852-33282077)
chr1 (149-378)||(14398132-14398361)
chr1 (281-366)||(14520674-14520759)
chr1 (149-212)||(362676-362739)
chr1 (149-212)||(9117494-9117557)
chr1 (136-207)||(33262000-33262071)
chr1 (136-207)||(33282159-33282230)
chr1 (144-234)||(1691294-1691384)
chr1 (144-207)||(27086276-27086339)
chr1 (149-207)||(1691567-1691625)
chr1 (149-211)||(7435385-7435446)
chr1 (150-216)||(29737938-29738003)
chr1 (142-207)||(14397985-14398050)
chr1 (149-186)||(23176369-23176406)
chr1 (321-377)||(9117329-9117385)
chr1 (140-212)||(26674583-26674655)
[»] chr5 (19 HSPs)
chr5 (155-359)||(40971848-40972042)
chr5 (150-377)||(32892124-32892342)
chr5 (149-378)||(15304482-15304714)
chr5 (149-378)||(21034625-21034843)
chr5 (149-376)||(7630487-7630703)
chr5 (149-207)||(26032250-26032308)
chr5 (297-367)||(36060579-36060649)
chr5 (148-246)||(38445669-38445767)
chr5 (149-213)||(12542111-12542175)
chr5 (284-345)||(2301990-2302051)
chr5 (144-212)||(36569605-36569673)
chr5 (144-212)||(36569826-36569894)
chr5 (149-213)||(40972141-40972205)
chr5 (149-348)||(42267566-42267768)
chr5 (149-264)||(38445937-38446052)
chr5 (144-212)||(25908660-25908728)
chr5 (143-207)||(36060764-36060828)
chr5 (144-212)||(41621561-41621629)
chr5 (141-233)||(41863732-41863824)
[»] chr3 (15 HSPs)
chr3 (144-270)||(16024769-16024895)
chr3 (149-252)||(1741971-1742074)
chr3 (228-378)||(28259788-28259938)
chr3 (169-273)||(9016853-9016957)
chr3 (164-287)||(31990093-31990216)
chr3 (149-367)||(52275010-52275225)
chr3 (149-234)||(31989806-31989891)
chr3 (149-212)||(54394310-54394373)
chr3 (149-207)||(51107680-51107738)
chr3 (149-273)||(54141593-54141716)
chr3 (136-222)||(6801251-6801337)
chr3 (149-207)||(16024524-16024582)
chr3 (149-194)||(28260031-28260076)
chr3 (149-257)||(25693299-25693407)
chr3 (143-211)||(33309969-33310037)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 151 - 376
Target Start/End: Original strand, 23757291 - 23757517
Alignment:
Q  151 aaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagtt 250  Q
    |||| |||||||  || |||||||||||| ||||||| |||||| ||||||||||||||||| ||| ||||||| | ||||||||| |||||||||| ||    
T  23757291 aaatcagtttttcatctttataaatatagcaaattttaattttaatccctaaaaaataaaatgagatgttttcatcctcacaaatttttttgttttattt 23757390  T
Q  251 ttggtccataatggatataatttaaacatctttttgaca-tttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaat 349  Q
    ||||||| |||||||||||| || ||||| ||||||||| ||| |  ||||| ||| ||||||||||| ||||||||||||||||| |||||||||  ||    
T  23757391 ttggtccttaatggatataactttaacatgtttttgacatttttttgaacattatatgaatatataaaggttgaacataataaacggacataacatagat 23757490  T
Q  350 acatcttgatcataaaagggttataat 376  Q
    ||||||||| |||||||| ||||||||    
T  23757491 acatcttgaacataaaagagttataat 23757517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 22209993 - 22210178
Alignment:
Q  181 aaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatggatataatttaaacatc 280  Q
    |||||||||||||  | ||||||| ||||||| ||| ||||||| | ||||||||| ||||||||||| ||||| |  |||| ||||||||||           
T  22209993 aaattttgatttttgttcctaaaagataaaatgagatgttttcatcctcacaaatttttttgttttagatttggcctttaatagatataattt------- 22210085  T
Q  281 tttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
        ||| |||| | |||||||||| ||||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||    
T  22210086 ----tgatattttt-aaacataatatgaatatataaaggttgaacataataaacggacataacatagatacatcttgatcataaaagtgttataatct 22210178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 306
Target Start/End: Original strand, 158706 - 158863
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| |||  | ||||||||  |||||||| ||||  ||||||||||||||||| ||| ||||||| |  |||||| | ||||||||||     
T  158706 ttaaataagtttttcgtctatgtaaatatatcaaattttggttttggtccctaaaaaataaaatgagatgttttcatccacacaaaattttttgttttat 158805  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataa 306  Q
    |||| || | |||||||||||||||  | || |||||||||||| |  ||||||||||    
T  158806 tttttgttcctaatggatataattttgatatgtttttgacattttttgaacataataa 158863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 352
Target Start/End: Complemental strand, 13515719 - 13515519
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattctt--t 240  Q
    ||||| ||||||||| |||  |||||||||||||||  ||||||| |||||| ||||||||| ||||||| ||| |||||||   |||||||       |    
T  13515719 ataggattaaataagatttc-gtccttataaatatatcaaattttaattttagtccctaaaatataaaattagatgttttcatagtcacaaaaaaaaaat 13515621  T
Q  241 tgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacat 340  Q
    ||||||  ||||||||| |||| ||||||||||  |||| |||||||          |||||||| ||||||||||||||||||||||||||||| ||||    
T  13515620 tgttttgtttttggtccctaatagatataattttgacatttttttga----------acataatatgaatatataaaagttgaacataataaacggacat 13515531  T
Q  341 aacatgaataca 352  Q
    ||| || |||||    
T  13515530 aacttggataca 13515519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 352
Target Start/End: Complemental strand, 13605252 - 13605052
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattctt--t 240  Q
    ||||| ||||||||| |||  |||||||||||||||  ||||||| |||||| ||||||||| ||||||| ||| |||||||   |||||||       |    
T  13605252 ataggattaaataagatttc-gtccttataaatatatcaaattttaattttagtccctaaaatataaaattagatgttttcatagtcacaaaaaaaaaat 13605154  T
Q  241 tgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacat 340  Q
    ||||||  ||||||||| |||| ||||||||||  |||| |||||||          |||||||| ||||||||||||||||||||||||||||| ||||    
T  13605153 tgttttgtttttggtccctaatagatataattttgacatttttttga----------acataatatgaatatataaaagttgaacataataaacggacat 13605064  T
Q  341 aacatgaataca 352  Q
    ||| || |||||    
T  13605063 aacttggataca 13605052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 22210319 - 22210222
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgtttt 246  Q
    ||||||||||||||  ||||||||||||||   ||||||||||||||||| ||| ||||||||||  | ||||||| | ||| ||||| |||| ||||    
T  22210319 ttaaataagtttttcatccttataaatataacgaattttgattttattccttaacaaataaaatagaatgttttcatcctcataaatttttttatttt 22210222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 15249668 - 15249554
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||||||| ||||  ||| |||||| |||  |||||||||||||  || |||||||||||||| ||| ||||||| | ||||||| | |||| ||||      
T  15249668 ttaaataagcttttcatccctataaacatatcaaattttgattttcgtcactaaaaaataaaatgagatgttttcatcctcacaaaattttttattttgt 15249569  T
Q  249 ttttggtccataatg 263  Q
    ||||||||| |||||    
T  15249568 ttttggtccttaatg 15249554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 33657654 - 33657589
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataa 214  Q
    |||||||| ||||| ||||||| ||||||||  ||||||||||||| | |||||||| ||||||||    
T  33657654 ttaaataaatttttcgtccttaaaaatatagcgaattttgattttagttcctaaaaagtaaaataa 33657589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 194465 - 194508
Alignment:
Q  309 atatataaaagttgaacataataaacgaacataacatgaataca 352  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||    
T  194465 atatataaatgttgaacataataaacggacataacatgcataca 194508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 309302 - 309345
Alignment:
Q  309 atatataaaagttgaacataataaacgaacataacatgaataca 352  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||    
T  309302 atatataaatgttgaacataataaacggacataacatgcataca 309345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 10167786 - 10167723
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| ||||||||| |||| |||||||||  | ||||||| ||||| |||||||||||||||||    
T  10167786 ttaattaagtttttagtccctataaatatttagaattttgtttttagtccctaaaaaataaaat 10167723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 40517189 - 40517158
Alignment:
Q  147 gtttaaataagttttttgtccttataaatata 178  Q
    ||||||||||||||||||||||||||||||||    
T  40517189 gtttaaataagttttttgtccttataaatata 40517158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 13515296 - 13515344
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattt 192  Q
    |||| ||||||||||||| ||||| |||||||||||  |||||||||||    
T  13515296 tagggttaaataagttttctgtccctataaatatagcgaattttgattt 13515344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 13604829 - 13604877
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattt 192  Q
    |||| ||||||||||||| ||||| |||||||||||  |||||||||||    
T  13604829 tagggttaaataagttttctgtccctataaatatagcgaattttgattt 13604877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 35213376 - 35213432
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccct 200  Q
    |||| ||||||| |||||| ||||||||||||||| ||| |||| |||||| |||||    
T  35213376 tagggttaaatatgtttttggtccttataaatatacaaactttttattttagtccct 35213432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 150 - 378
Target Start/End: Original strand, 41609030 - 41609260
Alignment:
Q  150 taaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat-aaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||| ||||||| | ||||||||||  ||||||  |||||| |||||  ||||| ||||| ||| ||||||| | ||||||||| |||||||||||    
T  41609030 taaataagctttttgttcctataaatataacaaatttatattttagtccctgcaaaattaaaattagatgttttcatcctcacaaatttttttgttttag 41609129  T
Q  249 ttttggtccataatggatat-aatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatga 347  Q
    ||||||||| |||||||||| ||||| |||||| |||| | |||| | | |||||||| ||||||||||| ||||||||||||||||| ||||||||||     
T  41609130 ttttggtccttaatggatattaattttaacatccttttaatatttttcatacataatatgaatatataaatgttgaacataataaacggacataacatgg 41609229  T
Q  348 atacatcttgatcataaaagggttataatct 378  Q
    |||||||||||||||||||| ||||||||||    
T  41609230 atacatcttgatcataaaagagttataatct 41609260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 378
Target Start/End: Original strand, 41823536 - 41823759
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgt 243  Q
    |||| ||||||||||||||  |||| |||||||||  |||||||||||||| ||| ||||| ||||||| ||| ||||| | | ||| ||||| ||||||    
T  41823536 tagggttaaataagtttttcatcctcataaatatatcaaattttgattttaatccttaaaagataaaatgagatgtttttatcctcataaatttttttgt 41823635  T
Q  244 tttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataac 343  Q
    |||||||||| ||| |||||||||||| ||   |||||||||           |||||||||  ||||||||||| ||||||||||||||| || ||||     
T  41823636 tttagttttgatccctaatggatataactttgtcatcttttt-----------aacataatataaatatataaaaattgaacataataaacaaatataaa 41823724  T
Q  344 atgaatacatcttgatcataaaagggttataatct 378  Q
    ||| |||||||||||||||||||| ||||||||||    
T  41823725 atggatacatcttgatcataaaagtgttataatct 41823759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 329
Target Start/End: Complemental strand, 17947372 - 17947192
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||| |||||  ||| ||||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||    |||| ||||     
T  17947372 ttaaataaatttttcatccctataaatatatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctcacaaaaaaatttgctttat 17947273  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataa 329  Q
    |||| |||| |||||||||||||||  ||||  |||||| |||| |  ||||||||| ||||||||||| |||||||||||    
T  17947272 tttttgtccttaatggatataattttgacatgcttttgaaattttttgaacataatatgaatatataaaggttgaacataa 17947192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 51203223 - 51203336
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| |||| ||||||||| |  ||||||||||||| ||||||||||||||||||  | | ||||| | |||| |||| ||||||||||     
T  51203223 ttaaataagtttttcgtccctataaatattgcgaattttgattttagtccctaaaaaataaaatagaatgctttcatcctcac-aatttttttgttttat 51203321  T
Q  249 ttttggtccataatg 263  Q
    ||||||||| |||||    
T  51203322 ttttggtccttaatg 51203336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 378
Target Start/End: Original strand, 5521305 - 5521443
Alignment:
Q  238 ttttgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaa 337  Q
    |||||||||| |||| |||  |||||||||||||| ||   | ||| |||||||| |  |||||||||  |||||||||| |||||||||||||||   |    
T  5521305 ttttgttttattttttgtctctaatggatataattgaac--tttttatgacatttttataacataatataaatatataaatgttgaacataataaataga 5521402  T
Q  338 cataacatgaatacatcttgatcataaaagggttataatct 378  Q
     |||||||| ||||||||||| |||||||| ||||||||||    
T  5521403 tataacatggatacatcttgaccataaaagagttataatct 5521443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 5521589 - 5521525
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaata 213  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||| ||| ||||||||||||||    
T  5521589 ttaaataagtttttcgtccctataaatatagcgaattttgattttagtccttaaaaaataaaata 5521525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 2478923 - 2479010
Alignment:
Q  135 caaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgtttt 222  Q
    ||||||||| | | |||||||||||||| |||| ||||||||||   ||||||||||||| |||||||||| |||||| ||| |||||    
T  2478923 caaataataaaaggttaaataagtttttcgtccctataaatatatttaattttgattttagtccctaaaaattaaaatgagatgtttt 2479010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 36620917 - 36620992
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttca 224  Q
    |||||||||||||| ||   ||||||||||  |||||||||||||| | ||||||||||||||| ||| |||||||    
T  36620917 ttaaataagtttttcgtaactataaatatattaaattttgattttagttcctaaaaaataaaatgagatgttttca 36620992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 31792626 - 31792720
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgt 243  Q
    |||||||| ||||| |||| ||||||||||  |||||||||||||| |  |||||||||||||| | | ||||||| | |||||| || ||||||    
T  31792626 ttaaataaatttttcgtccctataaatatatcaaattttgattttagtttctaaaaaataaaatgaaatgttttcatcctcacaattttttttgt 31792720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 11692150 - 11692211
Alignment:
Q  146 ggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||||||||||||||  ||| |||||||||||  ||||||||||||| || |||||||||    
T  11692150 ggtttaaataagtttttcatccctataaatatagcgaattttgattttagtctctaaaaaat 11692211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 11692368 - 11692287
Alignment:
Q  297 aacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||||||  |||||||||| |||||||||||||||| ||||||| ||  |||||  |||| |||||||| |||| |||||    
T  11692368 aacataatataaatatataaaggttgaacataataaacaaacataatatagatacaatttgaacataaaagtgttacaatct 11692287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 33413853 - 33413930
Alignment:
Q  175 tatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagtttt 252  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||| ||||||    ||||| |||||||||||||| ||||    
T  33413853 tatagtaaattttgatattagtccctaaaaaataaaatgagatgttttccttctcacatattcttttgttttattttt 33413930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 38851976 - 38852041
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataa 214  Q
    |||||||||||||| |||  || |||||||  |||||||||||||| ||| |||||||||||||||    
T  38851976 ttaaataagtttttcgtctctaaaaatataataaattttgattttaatccttaaaaaataaaataa 38852041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 23256947 - 23257023
Alignment:
Q  136 aaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    ||||||| | || |||| ||||||||| |||| |||||||||  | ||||||| ||||| |||||||||||||||||    
T  23256947 aaataattttgggttaattaagtttttagtccctataaatatttagaattttgtttttagtccctaaaaaataaaat 23257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 31312802 - 31312874
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||| |||| ||||||||| ||||||||||||||  | | ||||| ||||| |||||| ||||||||||    
T  31312802 aatatagggttaattaagtttttagtccttataaatattcacagttttgtttttagtccctacaaaataaaat 31312874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 27704785 - 27704722
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| ||||||||| |||| |||||||||  | ||||||| ||||| |||||||||||||||||    
T  27704785 ttaattaagtttttagtccctataaatatttagaattttgtttttagtccctaaaaaataaaat 27704722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 31792728 - 31792799
Alignment:
Q  307 gaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    ||||||||||| ||||||||||||||||| ||| |||| | ||| |  |||| |||||||| ||||||||||    
T  31792728 gaatatataaatgttgaacataataaacggacacaacaaggatataatttgaacataaaagagttataatct 31792799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 3460861 - 3460922
Alignment:
Q  147 gtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaata 208  Q
    |||| |||||||||||  || |||||||||||  |||||||||||||  |||||||||||||    
T  3460861 gttttaataagtttttcatcattataaatatatcaaattttgattttcatccctaaaaaata 3460922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 41609413 - 41609352
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattcccta 201  Q
    ||||| || |||||||||||||| || ||||| |||||||  ||||||||||||| ||||||    
T  41609413 aatattgggttaaataagtttttcgttcttatgaatatagcgaattttgattttaatcccta 41609352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 40154723 - 40154667
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaa 205  Q
    |||||||||||||| |||| ||||||||||  ||| |||||||||| || |||||||    
T  40154723 ttaaataagtttttcgtccctataaatatatcaaaatttgattttagtctctaaaaa 40154667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 53937806 - 53937746
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccct 200  Q
    |||| ||| ||||||| ||||||||||||||||||||||  || |||| |||||| |||||    
T  53937806 aataaagggttaaatatgttttttgtccttataaatataccaactttttattttagtccct 53937746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 366
Target Start/End: Complemental strand, 33005219 - 33005001
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaa-taaaataagacgttttcaacttcacaaattcttttgtttta 247  Q
    |||||||||||||| |||| ||||||||||  |||||||| ||||  ||||||||||| |||||| ||| ||||||| | ||||||||| ||||||||||    
T  33005219 ttaaataagtttttcgtccctataaatatattaaattttgcttttcgtccctaaaaaaataaaatgagaagttttcatcctcacaaatttttttgtttta 33005120  T
Q  248 gttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatga 347  Q
     |||| |||  |||||||||||||||   ||| |||||||||||| | |||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||     
T  33005119 tttttagtcactaatggatataattttgtcatgtttttgacattttttaaacataatatgaatatataaatgttgaacgtaataaacgtacataacttgg 33005020  T
Q  348 atacatcttgatcataaaa 366  Q
    |||||  |||| |||||||    
T  33005019 atacaatttgaacataaaa 33005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 329
Target Start/End: Original strand, 18503560 - 18503749
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattctt 239  Q
    ||||||||||||| ||||||||| |||||||||||||||  |||||||||||||  ||||||||||||||||| ||| ||||||| | ||||||  | ||    
T  18503560 aatataggtttaactaagtttttcgtccttataaatatatcaaattttgatttttatccctaaaaaataaaatgagatgttttcatcctcacaagatttt 18503659  T
Q  240 ttgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataa 329  Q
    |||| ||| |||| |||  |||| ||||||||||  | || |||||||| ||| |  |||||||||  ||||||||||  ||||||||||    
T  18503660 ttgtcttatttttagtcgctaatagatataattttgatatgtttttgacttttttttaacataatataaatatataaattttgaacataa 18503749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 25245321 - 25245390
Alignment:
Q  309 atatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25245321 atatataaatgttgaacataataaacgaacataacatgaatacatcttgatcataaaagagttataatct 25245390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 378
Target Start/End: Complemental strand, 33998934 - 33998716
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| ||| |||||||||||  |||||||||||||| ||||||||||||||||| |||  |||| | | ||| | ||| |||||||||      
T  33998934 ttaaataagttttt-gtctttataaatatattaaattttgattttagtccctaaaaaataaaatgagatatttttatcctcatacatttttttgttttga 33998836  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||||| ||  |||| ||||||||||  |||| ||||||          |||||||||  |||||||||||||||||||||||||| ||  |||||||  |    
T  33998835 ttttgatctctaatagatataattttgacatgtttttg----------aacataatataaatatataaaagttgaacataataaatgacaataacataga 33998746  T
Q  349 tacatcttgatcataaaagggttataatct 378  Q
    ||||  |||| |||||||  ||||||||||    
T  33998745 tacaatttgaacataaaaaagttataatct 33998716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 2147079 - 2146994
Alignment:
Q  242 gttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacata 328  Q
    |||||| ||||||||| ||||||||||| ||| ||||| ||||||| |||| || ||||||||| ||||||||||| ||||||||||    
T  2147079 gttttatttttggtccctaatggatatagttttaacatgtttttgatatttttg-aacataatatgaatatataaatgttgaacata 2146994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 33237042 - 33237138
Alignment:
Q  282 ttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||| |||| | ||||||||||  |||||||||| |||||||||||||||||   |||||||| ||||||||| || ||||||| |||| |||||    
T  33237042 ttttgatattttttaaacataatataaatatataaaggttgaacataataaacgtgaataacatggatacatcttaattataaaagagttacaatct 33237138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 30219117 - 30219055
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaa 206  Q
    |||| |||||||||||||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  30219117 tagggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctacaaaa 30219055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 25245014 - 25245133
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcaca-aattcttttgtttta 247  Q
    ||||||||||||||  ||| |||||| ||||  ||||||||||||  ||||||||| ||||||| | | ||||||| |||||||   || ||||||||||    
T  25245014 ttaaataagtttttcatccctataaaaatagcgaattttgattttgatccctaaaatataaaatgaaatgttttcatcttcacattttttttttgtttta 25245113  T
Q  248 gttttggtccataatggata 267  Q
     |||| |||| |||||||||    
T  25245114 tttttcgtccctaatggata 25245133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 33998566 - 33998617
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgatt 191  Q
    |||||||| |||||||||||||| ||| ||||||||||||| ||||||||||    
T  33998566 aatataggattaaataagtttttcgtcattataaatatagagaattttgatt 33998617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 15998800 - 15998862
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaa 211  Q
    |||||||| ||||| |||  || |||||||| |||||||||||||| ||||||||||||||||    
T  15998800 ttaaataattttttcgtctctaaaaatatagtaaattttgattttagtccctaaaaaataaaa 15998862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 26241570 - 26241481
Alignment:
Q  184 ttttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatggatataattt 273  Q
    |||| |||||| ||||||||||||||||| ||| ||||||| | ||| ||  | |||||||||| ||||| ||| ||||| |||||||||    
T  26241570 tttttattttaatccctaaaaaataaaatgagatgttttcatcctcaaaatattttttgttttatttttgatccctaatgaatataattt 26241481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 2145927 - 2145990
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||||||| ||| ||||||||||||  |||||| |||||| ||| |||||||| ||||    
T  2145927 ttaaataagtttttcgtctttataaatatagcgaatttttattttaatccttaaaaaattaaat 2145990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 37389856 - 37389781
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttca 224  Q
    ||||||||||||||| ||||||||||||||   |||||||||  || ||||||| | ||||||| ||| |||||||    
T  37389856 ttaaataagttttttatccttataaatataacgaattttgatactagtccctaatatataaaatcagatgttttca 37389781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 2195364 - 2195417
Alignment:
Q  158 ttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    ||||| ||||||| |||||||| ||||| ||||||||||||| ||||||||||||    
T  2195364 tttttcgtccttaaaaatatagtaaattatgattttattccc-aaaaaataaaat 2195417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 14584930 - 14584992
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaa 211  Q
    |||||||| ||||| |||  || |||||||  |||||||||||||| ||||||||||||||||    
T  14584930 ttaaataattttttcgtctctaaaaatataataaattttgattttagtccctaaaaaataaaa 14584992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 18564272 - 18564332
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaa 204  Q
    |||| ||||||| ||||||  |||||||||||||| ||| |||| ||||||||||| ||||    
T  18564272 tagggttaaatatgtttttgatccttataaatatacaaattttttattttattccccaaaa 18564332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 29956976 - 29956932
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgatttt 193  Q
    ||||||| |||||||||||||| ||||| || |||||||||||||    
T  29956976 ttaaataggttttttgtccttaaaaataaagcaaattttgatttt 29956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 41492351 - 41492399
Alignment:
Q  164 gtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| |||||||||  ||||||||| ||||| |||||||||||||||||    
T  41492351 gtccctataaatattcaaaattttgcttttagtccctaaaaaataaaat 41492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 151 - 378
Target Start/End: Complemental strand, 1112101 - 1111876
Alignment:
Q  151 aaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagtt 250  Q
    |||||||||||| |||| ||||||||||  | ||||| |||||| |||||||||||| |||| ||| ||||||| | |  |||| |  ||||||||| ||    
T  1112101 aaataagtttttcgtccctataaatatatcatattttaattttaatccctaaaaaattaaatgagatgttttcatccttgcaaaat--tttgttttactt 1112004  T
Q  251 ttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaata 350  Q
    ||||| | |||| ||||||||||  |||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||  |||||||||| |||    
T  1112003 ttggttcctaatcgatataattttgacatgtttttgacattttttaaacataatatgaatatataaaagttgaacataataaacagacataacatggata 1111904  T
Q  351 catcttgatcataaaagggttataatct 378  Q
     |  |||| |||||||| ||||||||||    
T  1111903 taatttgaacataaaagagttataatct 1111876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 346
Target Start/End: Complemental strand, 4096854 - 4096668
Alignment:
Q  148 tttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgtttta 247  Q
    ||||||||| ||||| |||| |||||||| |  |||||||||||||| |||||||||||| |||| ||| ||||||| | ||||||||| |||||||||     
T  4096854 tttaaataaatttttcgtccctataaataaatcaaattttgattttaatccctaaaaaattaaatgagatgttttcatcatcacaaatttttttgttttg 4096755  T
Q  248 gttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatg 346  Q
     ||||| ||| ||||||||||||           ||||||||||| |  ||||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  4096754 tttttgttccttaatggatataa-----------ttttgacatttttttaacataatatgaatatataaaagttaaacataataaa-ggacataacatg 4096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 3014629 - 3014504
Alignment:
Q  149 ttaaataagttttttg-tccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgtttta 247  Q
    |||||||||||||||  ||| |||||||||||  |||||| |||||| | |||||||||||||||  || ||||| | | ||||||||| ||||| ||||    
T  3014629 ttaaataagttttttcatccctataaatatagtgaatttttattttaattcctaaaaaataaaatgtgatgtttttatcctcacaaatttttttgcttta 3014530  T
Q  248 gttttggtccataatggatataattt 273  Q
     ||||||||| |||||||||||||||    
T  3014529 tttttggtccctaatggatataattt 3014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 375
Target Start/End: Complemental strand, 26386470 - 26386335
Alignment:
Q  240 ttgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaaca 339  Q
    |||||||| ||||||||   ||||||||| ||||  |||| ||||||||||||    |||||||||  |||||||||| ||||||||||||||||| | |    
T  26386470 ttgttttatttttggtctcaaatggatattattttgacatatttttgacattttctgaacataatataaatatataaatgttgaacataataaacggata 26386371  T
Q  340 taacatgaatacatcttgatcataaaagggttataa 375  Q
    |||| ||||||||  || | |||||||| |||||||    
T  26386370 taacttgaatacaatttaaacataaaagagttataa 26386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 3014488 - 3014418
Alignment:
Q  308 aatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||||| | |||||||| |||||||| | |||||||| ||||||||||| |||||||| ||||||||||    
T  3014488 aatatatatatgttgaacacaataaacggatataacatggatacatcttgaccataaaagagttataatct 3014418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 31836764 - 31836834
Alignment:
Q  308 aatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||||||||||| ||||||||||||||| |||| ||| |||||  |||| |||||||  ||||||||||    
T  31836764 aatatataaaagttaaacataataaacgaatataatatgtatacaatttgaacataaaaatgttataatct 31836834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 27771679 - 27771742
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||||||| ||||||||||||||  | | ||||| ||||| |||||| ||||||||||    
T  27771679 ttaaataagtttttagtccttataaatattcacagttttgtttttagtccctacaaaataaaat 27771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 12757228 - 12757302
Alignment:
Q  138 ataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| ||||| |||| ||||||||| ||||||||||||||  | | ||||| ||||| |||||| ||||||||||    
T  12757228 ataaaatagggttaattaagtttttagtccttataaatattcacagttttgtttttagtccctacaaaataaaat 12757302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 31836956 - 31836895
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaa 210  Q
    |||||||||||||  || |||||||||||||  |||||||||||||  ||||||||| ||||    
T  31836956 ttaaataagttttacgttcttataaatatagcgaattttgattttagcccctaaaaattaaa 31836895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 34707559 - 34707604
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgatttta 194  Q
    |||||||||||||| ||||||||||||||||  |||||| ||||||    
T  34707559 ttaaataagtttttagtccttataaatatagtgaattttaatttta 34707604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 12754020 - 12754072
Alignment:
Q  142 tataggtttaaataagttttttgtccttataaatatagaaaattttgatttta 194  Q
    |||||| |||||||||||||| ||||||| |||| |||  |||||||||||||    
T  12754020 tatagggttaaataagtttttcgtccttaaaaatttagcgaattttgatttta 12754072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 12754236 - 12754188
Alignment:
Q  297 aacataataagaatatataaaagttgaacataataaacgaacataacat 345  Q
    ||||||||| ||| ||| ||||||||||||||||||| | |||||||||    
T  12754236 aacataatatgaacatacaaaagttgaacataataaaaggacataacat 12754188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 24895480 - 24895677
Alignment:
Q  181 aaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatggatataatttaaacatc 280  Q
    ||||||||| |||| ||| || |||||||||| ||| ||||||| | || |||||| | |||||||||||||||||| |||  ||||| ||||  | |||    
T  24895480 aaattttgactttaatccttacaaaataaaatgagatgttttcatcctcgcaaattttattgttttagttttggtccctaacagatattattttgatatc 24895579  T
Q  281 tttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||||||||| | ||||||||||  |||||||||| |||||||||||||||   |||||| ||| |||||||||||||||||||| ||||||||||    
T  24895580 tttttgacattttttaaacataatagaaatatataaaggttgaacataataaaaagacataatatggatacatcttgatcataaaagagttataatct 24895677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 28191824 - 28191602
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttg 242  Q
    ||||| |||||||| |||||| | || |||||||||  |||||||||||||| ||  || |||||||||| ||| ||||||| | ||||||| | |||||    
T  28191824 atagggttaaataattttttttttct-ataaatatatcaaattttgattttaatctttacaaaataaaatgagatgttttcatcctcacaaaattttttg 28191726  T
Q  243 ttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataa 342  Q
    ||||  ||||||||  |||||||||||||||  |||| ||||| || ||| |  ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  28191725 ttttgtttttggtctctaatggatataattttgacatgtttttaactttttttgaacataatatgaatatataaaagttgaacataataaacggacataa 28191626  T
Q  343 catgaatacatcttgatcataaaa 366  Q
    |||| |||||  |||| |||||||    
T  28191625 catgtatacaatttgaacataaaa 28191602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 149 - 378
Target Start/End: Original strand, 12926509 - 12926738
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattct-tttgtttta 247  Q
    ||||||||||||||  ||  ||||||||||   ||||||||||||  ||||| ||||||||||| ||  ||||||| | |||||| || | |||||||||    
T  12926509 ttaaataagtttttcatcactataaatatattgaattttgattttcgtccctgaaaaataaaatgagttgttttcatcctcacaatttttgtttgtttta 12926608  T
Q  248 gttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatga 347  Q
     ||||||||| |||||||||||||||  || | |||||||||||| | || ||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  12926609 tttttggtccctaatggatataattttgacgtatttttgacattttttaa-cataatatgaatatataaatgttgaacataataaacggacataacatga 12926707  T
Q  348 atacatcttgatcataaaagggttataatct 378  Q
    ||| |  |||| ||||||||  |||||||||    
T  12926708 atataatttgagcataaaagaattataatct 12926738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 578237 - 578337
Alignment:
Q  173 aatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatggatataatt 272  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| |   ||||||| |||||||||||||||||||| ||||||||||||||    
T  578237 aatatagcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcccgacaaatttttttgttttagttttggtccctaatggatataatt 578336  T
Q  273 t 273  Q
    |    
T  578337 t 578337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 376
Target Start/End: Complemental strand, 7876531 - 7876305
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttg 242  Q
    ||||| |||||||| ||||| |||||||||||||||   ||||||||||||| ||||||||||   |||| ||| || |||| | |||||| || | ||     
T  7876531 atagggttaaataaatttttcgtccttataaatataatgaattttgattttaatccctaaaaat--aaatgagatgtgttcatcctcacaatttttatt- 7876435  T
Q  243 ttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataa 342  Q
     ||||   ||||||  ||||| |||||||||  |||  |||||| ||||| |  || |||||| ||||||||||||||||||||||||||||| ||||||    
T  7876434 -ttta---ttggtctctaatgtatataattttgacaagtttttggcattttttgaatataatatgaatatataaaagttgaacataataaacggacataa 7876339  T
Q  343 catgaatacatcttgatcataaaagggttataat 376  Q
    |||||||| |  |||| |||||||| ||||||||    
T  7876338 catgaatataatttgaacataaaagagttataat 7876305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 30956258 - 30956178
Alignment:
Q  298 acataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  30956258 acataatataaatatataaacgttgaacataataaacggacataacatgaatacatcttgaccataaaagagttataatct 30956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 367
Target Start/End: Original strand, 1943886 - 1944104
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| |||||||||||||||  | ||||| |||||| ||| || |||||| ||  ||  ||||||  | ||||||||| |||||||||      
T  1943886 ttaaataagtttttcgtccttataaatataatagattttaattttagtccttataaaatagaacgaggtgttttcttcctcacaaatttttttgttttgt 1943985  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||||||||  ||| | | ||||| |  || | || || |||||| |  ||||||||| ||| ||| ||||||||||||||||| ||| ||||||||||||    
T  1943986 ttttggtctttaacgaaaataatgttgacgtgttcttaacatttttttaacataatatgaacatacaaaagttgaacataatacacggacataacatgaa 1944085  T
Q  349 tacatcttgatcataaaag 367  Q
     |||| |||| ||||||||    
T  1944086 cacattttgaacataaaag 1944104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 35665671 - 35665547
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||| |||||||||| |||||  |||  ||| |||||||||| |||||||||| |||||| ||| ||||||| | |||||||   ||||||||||     
T  35665671 ttaaataaattttttgtccctataagcatatcaaaatttgattttagtccctaaaaactaaaatgagatgttttcatcctcacaaaaatttttgttttat 35665572  T
Q  249 ttttggtccataatggatataattt 273  Q
     |||||||| |||||||||||||||    
T  35665571 atttggtccctaatggatataattt 35665547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 35665322 - 35665387
Alignment:
Q  142 tataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||| |||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||    
T  35665322 tatagggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctaaaaaat 35665387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 25954800 - 25954640
Alignment:
Q  183 attttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttg-ttttagttttggtccataatggatataatttaaacatct 281  Q
    |||||||||||| |  |||||||||||||| ||| ||||||| | ||||||||| ||||| ||||| ||||||||| |||| ||||||||||  |||| |    
T  25954800 attttgattttagtttctaaaaaataaaatgagatgttttcatcctcacaaatttttttgtttttatttttggtccctaatagatataattttgacatgt 25954701  T
Q  282 ttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataa 342  Q
    ||| |||| || |  |||||||||  ||||  |||| | ||| |||||||||| |||||||    
T  25954700 tttggacaattttttaacataatataaatacctaaagggtgagcataataaacaaacataa 25954640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 578358 - 578415
Alignment:
Q  321 tgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  578358 tgaacatataaaacgaacataacatgaatacatcctgatcataaaagagttataatct 578415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 24895818 - 24895755
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||||||| ||||||| |||||||  |||||||||||||| |||||| ||||||||||    
T  24895818 ttaaataagtttttcgtccttacaaatataacaaattttgattttagtccctacaaaataaaat 24895755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 28191442 - 28191556
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||| |||||||||||||| |||||||||||  ||||||||||||| ||| || ||||| |||    | ||||||| | ||||||||| |||| |||||     
T  28191442 ttaattaagttttttgtccctataaatatagcgaattttgattttagtccgtacaaaattaaactgaatgttttcatcctcacaaatttttttattttat 28191541  T
Q  249 ttttggtccataatg 263  Q
    ||||||||| |||||    
T  28191542 ttttggtccttaatg 28191556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 653985 - 654101
Alignment:
Q  158 ttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcac-aaattcttttgttttagttttggtc 256  Q
    |||||| ||| | ||||||||  ||| ||||| ||||||||||||||| |||||| ||| ||||||| | |||| ||||| |||||||||| |||||||     
T  653985 ttttttttccctgtaaatatattaaaatttgactttattccctaaaaattaaaatcagatgttttcatcctcacaaaatttttttgttttatttttggtt 654084  T
Q  257 cataatggatataattt 273  Q
      | |||||||||||||    
T  654085 tcttatggatataattt 654101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 35652178 - 35652052
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgt 243  Q
    |||| ||||||||||||||  ||| ||||||||||  ||||||| |||||| |  ||||||||| |||| | | |||||||   ||||||| | ||||||    
T  35652178 tagggttaaataagtttttcatccctataaatatatcaaattttaattttagtttctaaaaaat-aaatgaaaagttttcactctcacaaaattttttgt 35652080  T
Q  244 tttagttttggtccataatggatataatt 272  Q
    |||| ||||||||| ||||||||||||||    
T  35652079 tttatttttggtcc-taatggatataatt 35652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 366
Target Start/End: Complemental strand, 43281953 - 43281719
Alignment:
Q  134 tcaaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaa 233  Q
    |||||| || |||| ||||||||||||||  |||| |||| ||||  |||||||||||||| | ||||||| ||||||| |||  ||||   | ||| |     
T  43281953 tcaaattatttagggttaaataagtttttcatcctaataa-tataacaaattttgattttagttcctaaaatataaaatgagatttttttctcctcaaat 43281855  T
Q  234 attcttttgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaac---ataataagaatatataaaagttgaacataat 330  Q
    |   |||||||||  ||||||||| |||||||||||||||  ||   || ||||||||| || |||   |||||| ||| ||| ||| ||||||||||||    
T  43281854 aaatttttgttttgtttttggtccttaatggatataattttgactcgttcttgacatttttggaacattataatatgaacatacaaaggttgaacataat 43281755  T
Q  331 aaacgaacataacatgaatacatcttgatcataaaa 366  Q
    ||| | ||||||| |||  | ||||||| |||||||    
T  43281754 aaagggacataacgtgagcatatcttgaacataaaa 43281719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 578546 - 578483
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaata 213  Q
    |||||||||||||  |||| ||||||| |||  ||||||||||||| ||||||||||||||||||    
T  578546 ttaaataagttttc-gtccatataaatgtagtgaattttgattttagtccctaaaaaataaaata 578483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 37866632 - 37866532
Alignment:
Q  164 gtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatg 263  Q
    ||||||| || ||||||||||||||| |||| | | ||| ||||||| || || ||||||| | ||||||| | || ||||||| ||||||||| |||||    
T  37866632 gtccttaaaagtatagaaaattttgaatttagtacttaagaaataaagtatgatgttttcatcctcacaaaattttatgttttacttttggtccctaatg 37866533  T
Q  264 g 264  Q
    |    
T  37866532 g 37866532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 10439885 - 10439830
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaa 204  Q
    |||||||||||||||||  ||| |||||||  |||||||||||||| |||||||||    
T  10439885 ttaaataagttttttgttgttaaaaatatatcaaattttgattttagtccctaaaa 10439830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 27003059 - 27002996
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||| ||| |||| |||||||||   |||||| ||||||| |||||||||||||||||    
T  27003059 ttaaataagtgtttcgtccctataaatatgtcaaatttggattttagtccctaaaaaataaaat 27002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 17642685 - 17642627
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||||||||||| |||| || ||||||||  ||||||||||||| ||| ||||||||    
T  17642685 ttaaataagtttttcgtccctaaaaatatagcgaattttgattttagtccttaaaaaat 17642627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 26684179 - 26684229
Alignment:
Q  142 tataggtttaaataagttttttgtccttataaatatagaaaattttgattt 192  Q
    |||||| ||||||||||||||||||| |||||||||||  |||||| ||||    
T  26684179 tatagggttaaataagttttttgtccctataaatatagtgaattttaattt 26684229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 35652040 - 35651979
Alignment:
Q  297 aacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgat 359  Q
    |||||||||  |||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||    
T  35652040 aacataatacaaatatataaaggttgaacataataaacaaacataaaatggata-atcttgat 35651979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 36065705 - 36065775
Alignment:
Q  142 tataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||| |||| ||||||||| |||| |||||||||  | ||||||| ||||| || ||||||||||||||    
T  36065705 tatagggttaattaagtttttagtccctataaatattcagaattttgcttttagtcactaaaaaataaaat 36065775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 40948872 - 40948934
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaa 211  Q
    ||||||||||||||| ||| ||||||||||  ||||||| |||||| ||| || |||||||||    
T  40948872 ttaaataagttttttatccctataaatataacaaatttttattttagtccatataaaataaaa 40948934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 7693570 - 7693627
Alignment:
Q  150 taaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||| |||||| || | |||||||||||| ||||||||||||| |||| |||||||    
T  7693570 taaatatgtttttcgttcctataaatatagagaattttgattttagtcccaaaaaaat 7693627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 36595605 - 36595544
Alignment:
Q  139 taatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccct 200  Q
    ||||||||| ||||||| ||||||||||| ||||||||||  |||||||  ||||| |||||    
T  36595605 taatataggattaaatatgttttttgtccctataaatatatcaaattttcgttttagtccct 36595544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 12496620 - 12496664
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgatttt 193  Q
    ||||||||||||||||||| ||||||||||  ||| |||||||||    
T  12496620 ttaaataagttttttgtccctataaatatattaaaatttgatttt 12496664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 792 - 636
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||| ||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||| ||  ||||||| | ||||||||| |||||||||||    
T  792 ttaaataaatttttcgtccctataaatataacaaattttaattttattccctaaaaaatataatgagttgttttcatcatcacaaatttttttgttttag 693  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataata 305  Q
    ||||||||||||||||||||||||   |||||||| |||||||| | | ||||||||    
T  692 ttttggtccataatggatataattctgacatctttatgacatttttaatacataata 636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 339
Target Start/End: Original strand, 27085956 - 27086147
Alignment:
Q  149 ttaaataagttttttgtccttataaatatag-aaaattttgattttattccctaaaaaataaaa-taagacgttttcaacttcacaaattcttttgtttt 246  Q
    ||||||||| ||||||||||||||||||||  |||| ||| |||||| |||||||||||||||| | ||| ||||||| | ||||||||| |||||||||    
T  27085956 ttaaataagatttttgtccttataaatatatcaaaaatttaattttagtccctaaaaaataaaaatgagatgttttcatcctcacaaatttttttgtttt 27086055  T
Q  247 agttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaaca 339  Q
    | ||||||||| ||||| |||||||||  |||| |||||||||||| |  ||||||||| |||||||| || |||||||| ||||||| ||||    
T  27086056 atttttggtccctaatgaatataattttgacatatttttgacattt-tagaacataatatgaatatatgaaggttgaacacaataaactaaca 27086147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 376
Target Start/End: Original strand, 33261693 - 33261918
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| ||||||||||| |||  |||||||||||||| ||||||||||||||||| ||| ||||||| | | | |||    ||  |||||     
T  33261693 ttaaataagtttttcgtccttataaa-atatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctaaaaaaaaaattc-ttttat 33261790  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||||||||| |||||||||||||||  |||| ||| |||||||| |  ||||||||| ||||||||||| ||||||||||||||||  |||||| ||| |    
T  33261791 ttttggtccttaatggatataattttgacatgtttgtgacattttttgaacataatatgaatatataaaggttgaacataataaacatacataatatgga 33261890  T
Q  349 tacatcttgatcataaaagggttataat 376  Q
    ||||  |||| |||||||  ||||||||    
T  33261891 tacaatttgaacataaaaaagttataat 33261918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 376
Target Start/End: Original strand, 33281852 - 33282077
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| ||||||||||| |||  |||||||||||||| ||||||||||||||||| ||| ||||||| | | | |||    ||  |||||     
T  33281852 ttaaataagtttttcgtccttataaa-atatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctaaaaaaaaaattc-ttttat 33281949  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||||||||| |||||||||||||||  |||| ||| |||||||| |  ||||||||| ||||||||||| ||||||||||||||||  |||||| ||| |    
T  33281950 ttttggtccttaatggatataattttgacatgtttgtgacattttttgaacataatatgaatatataaaggttgaacataataaacatacataatatgga 33282049  T
Q  349 tacatcttgatcataaaagggttataat 376  Q
    ||||  |||| |||||||  ||||||||    
T  33282050 tacaatttgaacataaaaaagttataat 33282077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 378
Target Start/End: Complemental strand, 14398361 - 14398132
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||| |||||||| |||| | ||||||||  |||||||||||||| |  |||| ||||||||| ||| ||||||| | ||| |||    |||||||||     
T  14398361 ttaaaaaagtttttcgtccatgtaaatatatcaaattttgattttagtttctaacaaataaaatgagatgttttcatcctcataaaaaaatttgttttat 14398262  T
Q  249 ttttggtccataatggatataatttaaacatctttttgaca-tttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatga 347  Q
    ||||||||| |||| ||||||| || ||||| ||||||||| |||||| ||||||||| || ||| |||||  | ||||||||||||| |||| | |||     
T  14398261 ttttggtccttaatcgatataagtttaacatatttttgacattttatg-aacataatatgagtatgtaaaatattaacataataaacggacattatatgg 14398163  T
Q  348 atacatcttgatcataaaagggttataatct 378  Q
    |||||  |||| ||||||||  |||||||||    
T  14398162 atacaatttgaacataaaagaattataatct 14398132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 14520759 - 14520674
Alignment:
Q  281 tttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaa 366  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||||||||||   |||||||||||||| || |||||| |||||||    
T  14520759 tttttgacatttatttaacataatatgaacatataaaagttgaacataataggtgaacataacatgaacacttcttgaacataaaa 14520674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 362676 - 362739
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||||||| |||| ||||||||||  ||| |||||||||| |||||||||||||||||    
T  362676 ttaaataagtttttcgtccctataaatatattaaaatttgattttaatccctaaaaaataaaat 362739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 9117557 - 9117494
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||| | | |||||||| ||||    
T  9117557 ttaaataagttttttgtccctataaatataacaaattttgattttagttcttaaaaaattaaat 9117494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 33262071 - 33262000
Alignment:
Q  136 aaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||| ||||| | |||||||||||| || | |||||||||||  ||||||||||||| ||||||||||||    
T  33262071 aaataaaatagggtcaaataagtttttcgttcctataaatatagctaattttgattttagtccctaaaaaat 33262000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 33282230 - 33282159
Alignment:
Q  136 aaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||| ||||| | |||||||||||| || | |||||||||||  ||||||||||||| ||||||||||||    
T  33282230 aaataaaatagggtcaaataagtttttcgttcctataaatatagctaattttgattttagtccctaaaaaat 33282159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 1691294 - 1691384
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaa 234  Q
    |||| |||||||||||||| |||| |||| ||| |  ||| |||||||||| |||||||||  |||||| ||| ||||||| |||||||||    
T  1691294 tagggttaaataagtttttcgtccctatagatacattaaaatttgattttagtccctaaaatgtaaaatgagatgttttcatcttcacaaa 1691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 27086339 - 27086276
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||| ||||||||||||||  ||||||||||||||  ||||| |||||||| ||| ||||||||    
T  27086339 tagggttaaataagtttttcatccttataaatataacaaattctgattttagtccttaaaaaat 27086276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 1691625 - 1691567
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    ||||||| |||||| |||| |||||||||||  ||||||||||||| || |||||||||    
T  1691625 ttaaataggtttttcgtccctataaatatagcgaattttgattttagtctctaaaaaat 1691567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 7435385 - 7435446
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaa 211  Q
    |||||||| ||||||||||||| ||||||||  || ||||| |||| ||||||||||||||||    
T  7435385 ttaaataaattttttgtccttaaaaatatagtgaa-tttgactttaatccctaaaaaataaaa 7435446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 29737938 - 29738003
Alignment:
Q  150 taaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataaga 216  Q
    ||||||||||||| |||| || ||| |||| |||||||||||||| | |||||||| ||||||||||    
T  29737938 taaataagtttttcgtccataaaaa-atagcaaattttgattttagttcctaaaaattaaaataaga 29738003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 14397985 - 14398050
Alignment:
Q  142 tataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||| ||||||||||||||  ||| ||||||||||   ||||||||||||| | ||||||||||    
T  14397985 tatagggttaaataagtttttcatccatataaatataactaattttgattttagttcctaaaaaat 14398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 23176406 - 23176369
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattt 186  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  23176406 ttaaataagtttttagtccttataaatatagagaattt 23176369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 9117385 - 9117329
Alignment:
Q  321 tgaacataataaacgaacataacatgaatacatcttgatcataaaagggttataatc 377  Q
    ||||||||||||||  |||||||||||| |||| |||| ||||||||  ||||||||    
T  9117385 tgaacataataaacagacataacatgaacacattttgaacataaaagatttataatc 9117329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 26674583 - 26674655
Alignment:
Q  140 aatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||| |||| ||||||||| ||||||||||||||  | | ||||| ||||| || ||| ||||||||||    
T  26674583 aatatagggttaattaagtttttagtccttataaatattcacagttttgtttttaatctctacaaaataaaat 26674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 155 - 359
Target Start/End: Original strand, 40971848 - 40972042
Alignment:
Q  155 aagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttgg 254  Q
    ||||||||  ||||||||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||| | || ||| || |||| ||||||||||||    
T  40971848 aagtttttcatccttataaatataataaattttgattttagtccctaaaaaataaaatgagatgttttcatcctctcaattttttttattttagttttgg 40971947  T
Q  255 tccataatggatataatttaaacatctttttgacatttatgaaacataataagaata-tataaaagttgaacataataaacgaacataacatgaatacat 353  Q
     || |||||||| |||           ||||||||||| | |||||||||| ||||| |||||||||||||||||||||||| |||||| ||  ||||||    
T  40971948 cccctaatggatttaa-----------ttttgacattttttaaacataatatgaatattataaaagttgaacataataaacggacataatatagatacat 40972036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 377
Target Start/End: Original strand, 32892124 - 32892342
Alignment:
Q  150 taaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaa---ttcttttgtttt 246  Q
    |||||||||||||  ||| ||||||||| | |||||||||||||| ||| |||||||| | ||     ||||||| | ||||||    || |||||||||    
T  32892124 taaataagtttttcatccctataaatatggtaaattttgattttagtccataaaaaatgagat-----gttttcatcctcacaatatttttttttgtttt 32892218  T
Q  247 agttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatg 346  Q
    ||||||||||| |||||||||||||||  ||||||       |||| |||||||||||| ||||||||||| | | ||||||||||||  |||||||||     
T  32892219 agttttggtccctaatggatataattttgacatct-------atttttgaaacataatatgaatatataaaggataaacataataaacagacataacata 32892311  T
Q  347 aatacatcttgatcataaaagggttataatc 377  Q
     |||||||||||||||||||| |||||||||    
T  32892312 gatacatcttgatcataaaagagttataatc 32892342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 378
Target Start/End: Complemental strand, 15304714 - 15304482
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaa-attttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgtttta 247  Q
    |||||||| ||||  ||||||||| ||||| | | |||||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||| | |||||||||     
T  15304714 ttaaataacttttccgtccttatatatatatatatattttgcttttagtccttaaaaaataaaatgagatgtttttatcttcacaaaattttttgttttc 15304615  T
Q  248 gttttggtccataatggatataatttaaacatctttttgacattta--tgaaacataataagaatatataaaagttgaacataataaacgaacataacat 345  Q
     ||||||||  |||| |||||| |||  |||| ||| |||  |||   |  |||||||||| |||||||||||||||||||||||||||  |||||| ||    
T  15304614 tttttggtctctaatagatatatttttgacatgtttgtgaatttttcttttaacataataaaaatatataaaagttgaacataataaacatacataatat 15304515  T
Q  346 gaatacatcttgatcataaaagggttataatct 378  Q
    |||||||  |||| |||| ||| ||||||||||    
T  15304514 gaatacaatttgaacatataagagttataatct 15304482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 378
Target Start/End: Original strand, 21034625 - 21034843
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||||||||||||  ||| ||||||||||  ||||||||||| || |||| |||||||||||| ||| ||||||| | |||||||   ||||||||||     
T  21034625 ttaaataagtttttgttccctataaatatatcaaattttgattatagtccccaaaaaataaaatgagatgttttcaccctcacaaaaaattttgttttat 21034724  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||| ||||  |||||||||| |           |||||||||||    |||||||||  |||||||||| ||||||||||||||||| | ||||| ||||    
T  21034725 tttcggtctctaatggatatta-----------ttttgacattttctgaacataatataaatatataaatgttgaacataataaacggatataacttgaa 21034813  T
Q  349 tacatcttgatcataaaagggttataatct 378  Q
    ||||  || | |||||||| ||||||||||    
T  21034814 tacaatttaaacataaaagagttataatct 21034843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 376
Target Start/End: Complemental strand, 7630703 - 7630487
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| |||  ||||||||||  |||||||||||||| ||||||||||||||||  ||| ||||||| | | |||| || ||||||         
T  7630703 ttaaataagtttttcgtctctataaatatatcaaattttgattttagtccctaaaaaataaaaagagatgttttcatccttacaattttttttgt----- 7630609  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatga-aacataataagaatatataaaagttgaacataataaacgaacataacatga 347  Q
           || | |||||||||||||  |||| |||||||||||| |   ||||||||| ||||||||||| |||||||||| |||||  |||||| |||     
T  7630608 -------ccttgatggatataattttgacatgtttttgacattttttttaacataatatgaatatataaaggttgaacatattaaacagacataagatgg 7630516  T
Q  348 atacatcttgatcataaaagggttataat 376  Q
    |||||  |||| |||||||| ||||||||    
T  7630515 atacaatttgaacataaaagagttataat 7630487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 26032250 - 26032308
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||| ||||||||||||    
T  26032250 ttaaataagtttttcgtccctataaatatagcgaattttgattttaatccctaaaaaat 26032308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 36060579 - 36060649
Alignment:
Q  297 aacataataagaatatataaaagttgaacataataaacgaacataacatgaatacatcttgatcataaaag 367  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||    
T  36060579 aacataatatgaacatacaaaagttgaacataataaacgaatataatatgaacacattttgaacataaaag 36060649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 38445669 - 38445767
Alignment:
Q  148 tttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgtttt 246  Q
    ||||||||||||||| |||| ||||||| ||  |||||||||||||| || |||||| ||||||| ||  ||||||| | ||||||| | |||||||||    
T  38445669 tttaaataagtttttcgtccctataaatgtatcaaattttgattttagtctctaaaatataaaatgagctgttttcatcgtcacaaaattttttgtttt 38445767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 12542111 - 12542175
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaata 213  Q
    ||||||||||||||||||  ||||||||||   ||||||||||||| ||||||||||||| ||||    
T  12542111 ttaaataagttttttgtctctataaatataatgaattttgattttaatccctaaaaaatataata 12542175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 2302051 - 2301990
Alignment:
Q  284 ttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacat 345  Q
    ||||||||| |  ||||||||| ||| ||| |||||||||||||||||||| ||||||||||    
T  2302051 ttgacatttttttaacataatatgaacatagaaaagttgaacataataaacaaacataacat 2301990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 36569605 - 36569673
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| |||||||||||||| ||||||||||||||  | | ||||| ||||| |||||| ||||||||||    
T  36569605 tagggttaaataagtttttagtccttataaatattcacagttttgtttttagtccctacaaaataaaat 36569673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 36569894 - 36569826
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| |||| ||||||||| ||||||||||||||  | | ||||| ||||| |||||||||||||||||    
T  36569894 tagggttaattaagtttttagtccttataaatattcacagttttgtttttagtccctaaaaaataaaat 36569826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 40972205 - 40972141
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaata 213  Q
    |||||||| |||||  ||| ||||||||||   ||||||||||||| ||||||||||||||||||    
T  40972205 ttaaataattttttcatccctataaatataacgaattttgattttagtccctaaaaaataaaata 40972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 348
Target Start/End: Original strand, 42267566 - 42267768
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattcc---ctaaaaaataaaataagacgttttcaacttcacaaattcttttgttt 245  Q
    |||||||||||||| | |||||||||||||  | |||||||||||| |||    || |||||||||||||  ||||||| | || |||||  ||||||||    
T  42267566 ttaaataagtttttcgcccttataaatataatatattttgattttagtccttattataaaataaaataaggtgttttcatcctcccaaatatttttgttt 42267665  T
Q  246 tagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacat 345  Q
    |  |||| |||| |||   | |||||||  || | || ||||||||| |  ||||||||| | | ||| |||| |||||||||| ||| | |||||||||    
T  42267666 tgttttttgtccctaacaaaaataattttgacgtgttcttgacattttttgaacataatatgtacatacaaaaattgaacataaaaaaaggacataacat 42267765  T
Q  346 gaa 348  Q
    |||    
T  42267766 gaa 42267768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 38446052 - 38445937
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||||||||||||  ||| |||||||| ||  ||||||||||||| |||||||||||| |||    | ||||||||| ||||||| |  ||| ||||      
T  38446052 ttaaataagtttttcatccctataaatacagcgaattttgattttagtccctaaaaaattaaactgaatgttttcaacctcacaaaataatttattttgc 38445953  T
Q  249 ttttggtccataatgg 264  Q
    ||||||||| ||||||    
T  38445952 ttttggtccttaatgg 38445937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 25908728 - 25908660
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| |||| ||| ||||| |||| |||||||||  | ||||||| ||||| |||||||||||||||||    
T  25908728 tagggttaattaaatttttagtccctataaatattcacaattttgtttttagtccctaaaaaataaaat 25908660  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 36060828 - 36060764
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    ||||| |||||||||||||| ||   || ||||||||  ||||||||||||| ||||||||||||    
T  36060828 atagggttaaataagtttttcgtttctaaaaatatagtgaattttgattttagtccctaaaaaat 36060764  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 41621629 - 41621561
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||| |||| ||||||||| ||||||||||||||  | | ||||| ||||| |||||| ||||||||||    
T  41621629 tagggttaattaagtttttagtccttataaatattcacagttttgtttttagtccctacaaaataaaat 41621561  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 41863824 - 41863732
Alignment:
Q  141 atataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaa 233  Q
    ||||||| ||||||||||||||  ||| | ||||||||  ||| ||| |||||| || ||| |||||||||| ||| ||||||| | ||||||    
T  41863824 atatagggttaaataagtttttcatccctgtaaatatatcaaaattttattttaatctctataaaataaaatgagatgttttcatcctcacaa 41863732  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 16024895 - 16024769
Alignment:
Q  144 taggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgt 243  Q
    |||| ||||||||||| || |||| ||||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||| | ||||| ||| |||| |    
T  16024895 tagggttaaataagttattcgtccctataaatatatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctcacatatttttttat 16024796  T
Q  244 tttagttttggtccataatggatataa 270  Q
    |||| ||||||||  ||||| ||||||    
T  16024795 tttatttttggtctctaatgaatataa 16024769  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 1741971 - 1742074
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||||||| ||||  ||| ||||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||   ||||||||||     
T  1741971 ttaaataagattttcatccctataaatatatcaaattttgattttaatccctaaaaaataaaatgagatgttttcatcctcacaaaaaattttgttttat 1742070  T
Q  249 tttt 252  Q
    ||||    
T  1742071 tttt 1742074  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 378
Target Start/End: Original strand, 28259788 - 28259938
Alignment:
Q  228 tcacaaattcttttgttttagttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacat 327  Q
    ||||||| | |||||||||  ||||||||| ||| | | |||||||  || | || ||||||||| |  ||||||||| ||| ||| |||||||||||||    
T  28259788 tcacaaaattttttgttttgtttttggtccctaacgaaaataattttgacgtgttcttgacatttgtttaacataatatgaacatacaaaagttgaacat 28259887  T
Q  328 aataaacgaacataacatgaatacatcttgatcataaaagggttataatct 378  Q
    |||||||  |||||||||||| |||| ||||  ||||||| || |||||||    
T  28259888 aataaacagacataacatgaacacattttgaaaataaaagagtcataatct 28259938  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 9016957 - 9016853
Alignment:
Q  169 tataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatggatat 268  Q
    ||||||||||  ||| |||| ||||  ||||||| ||||||||| | | ||||||| | |||||| || |||||||||| |||| |||||||||||||||    
T  9016957 tataaatatatcaaactttggttttcgtccctaacaaataaaatgaaatgttttcatcctcacaattttttttgttttattttttgtccataatggatat 9016858  T
Q  269 aattt 273  Q
    |||||    
T  9016857 aattt 9016853  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 31990216 - 31990093
Alignment:
Q  164 gtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttagttttggtccataatg 263  Q
    |||| ||||||||||  ||||||| |||||| ||||||| ||| ||||| |||  |||||  | | ||||| | |||||||||| ||||||||| |||||    
T  31990216 gtccctataaatatatcaaattttaattttagtccctaagaaacaaaatgagatattttcctccttacaaaattttttgttttatttttggtccctaatg 31990117  T
Q  264 gatataatttaaacatctttttga 287  Q
    ||||||||||  |||| |||||||    
T  31990116 gatataattttgacatgtttttga 31990093  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 367
Target Start/End: Complemental strand, 52275225 - 52275010
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| ||||| |||||||||  | ||||||| |||| ||| || |||||||||  ||  ||||||| | |  ||||||  ||| ||||      
T  52275225 ttaaataagtttttcgtcct-ataaatataacagattttgagtttagtccttataaaataaaacgaggtgttttcatccttgcaaatt--tttattttgt 52275129  T
Q  249 ttttggtccataatggatataatttaaacatctttttgacatttatgaaacataataagaatatataaaagttgaacataataaacgaacataacatgaa 348  Q
    ||||||||| ||| | | |||||||  |||| || ||||||||  | |||||||||| ||| ||| ||||| | ||||||||||| | ||||||||||||    
T  52275128 ttttggtccctaacgaaaataattttgacatgttcttgacattctttaaacataatatgaacatacaaaagctaaacataataaatggacataacatgaa 52275029  T
Q  349 tacatcttgatcataaaag 367  Q
     ||||||||| ||| ||||    
T  52275028 cacatcttgaacattaaag 52275010  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 31989806 - 31989891
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaa 234  Q
    |||||||||||||| |||| ||||||||||  ||||||| |||||| |||||||||||| ||||   ||||||||| | |||||||    
T  31989806 ttaaataagtttttcgtccatataaatatatcaaattttcattttagtccctaaaaaattaaattgaacgttttcatcctcacaaa 31989891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 54394310 - 54394373
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaat 212  Q
    |||||||||||||| || ||||||| |||| | ||||||||||||| |||||||||||| ||||    
T  54394310 ttaaataagtttttcgttcttataactataaagaattttgattttagtccctaaaaaattaaat 54394373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 51107680 - 51107738
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    ||||||||||| |||||||||| |||||||  |||||||||||||| || |||||||||    
T  51107680 ttaaataagttctttgtccttaaaaatataacaaattttgattttagtcgctaaaaaat 51107738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 54141716 - 54141593
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    ||||| |||||||||||||  || ||||||  ||||||| |||||| ||  |||||| |||||| ||| ||||||| | ||||||| | |||||||||      
T  54141716 ttaaaaaagttttttgtccccatgaatataacaaattttcattttagtctttaaaaa-taaaatgagatgttttcatcctcacaaaattttttgttttgt 54141618  T
Q  249 ttttggtccataatggatataattt 273  Q
    ||||||||| |||| ||| ||||||    
T  54141617 ttttggtccctaatagatgtaattt 54141593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 6801337 - 6801251
Alignment:
Q  136 aaataatataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgtttt 222  Q
    |||| |||| || |||| ||||||||| ||||||||||||||  | | ||||| ||||| |||||| |||||||||| |||| ||||    
T  6801337 aaatgatattgggttaattaagtttttagtccttataaatattcacagttttgtttttagtccctataaaataaaatcagacatttt 6801251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 16024524 - 16024582
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaat 207  Q
    |||||||||||||| |||   ||||||||||  ||||||||||||| ||||||||||||    
T  16024524 ttaaataagtttttcgtctcaataaatatagcgaattttgattttaatccctaaaaaat 16024582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 28260076 - 28260031
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgatttta 194  Q
    |||||||||||||| |||| || |||||||| ||||||||||||||    
T  28260076 ttaaataagtttttcgtccctaaaaatatagcaaattttgatttta 28260031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 25693299 - 25693407
Alignment:
Q  149 ttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaataagacgttttcaacttcacaaattcttttgttttag 248  Q
    |||||||||||||| |||| ||||| ||||  | |||||||||||  ||| || |||||||||  ||  ||||||| | ||||||||| | |||||||      
T  25693299 ttaaataagtttttcgtccctataattataacatattttgattttggtccttataaaataaaacgaggtgttttcatcctcacaaattttgttgttttgt 25693398  T
Q  249 ttttggtcc 257  Q
    |||||||||    
T  25693399 ttttggtcc 25693407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 33310037 - 33309969
Alignment:
Q  143 ataggtttaaataagttttttgtccttataaatatagaaaattttgattttattccctaaaaaataaaa 211  Q
    ||||| ||||||||||||||  ||| || | ||||||  |||||| |||||| ||||||||||||||||    
T  33310037 atagggttaaataagtttttcttccctaaatatatagcgaatttttattttagtccctaaaaaataaaa 33309969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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