View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3671_low_1 (Length: 517)

Name: NF3671_low_1
Description: NF3671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3671_low_1
NF3671_low_1
[»] chr3 (23 HSPs)
chr3 (169-353)||(7417754-7417938)
chr3 (176-354)||(8400810-8400988)
chr3 (176-353)||(35198721-35198898)
chr3 (169-353)||(22855843-22856027)
chr3 (176-326)||(50823681-50823831)
chr3 (176-326)||(50852029-50852179)
chr3 (180-353)||(34824512-34824685)
chr3 (176-341)||(52545289-52545454)
chr3 (180-342)||(55467966-55468129)
chr3 (180-338)||(43334057-43334215)
chr3 (215-354)||(48077979-48078118)
chr3 (169-280)||(22371721-22371832)
chr3 (176-262)||(37330606-37330692)
chr3 (183-324)||(50726003-50726144)
chr3 (183-324)||(50786704-50786845)
chr3 (176-262)||(37454743-37454829)
chr3 (177-262)||(30534902-30534987)
chr3 (176-286)||(19872482-19872592)
chr3 (196-294)||(29635883-29635981)
chr3 (176-250)||(25910665-25910739)
chr3 (181-335)||(42876189-42876343)
chr3 (273-354)||(39438915-39438996)
chr3 (176-220)||(773666-773710)
[»] chr7 (17 HSPs)
chr7 (176-353)||(35109647-35109824)
chr7 (177-353)||(38265237-38265413)
chr7 (180-353)||(16059356-16059529)
chr7 (176-353)||(34721790-34721967)
chr7 (176-353)||(21577097-21577274)
chr7 (176-342)||(41151139-41151306)
chr7 (180-353)||(38405157-38405330)
chr7 (176-350)||(45278411-45278585)
chr7 (180-353)||(18116947-18117120)
chr7 (182-353)||(11216725-11216896)
chr7 (181-315)||(12472115-12472249)
chr7 (176-296)||(245263-245383)
chr7 (176-291)||(37095209-37095324)
chr7 (180-350)||(48176359-48176529)
chr7 (176-308)||(23028684-23028816)
chr7 (261-353)||(40038621-40038713)
chr7 (176-277)||(28407540-28407637)
[»] chr4 (25 HSPs)
chr4 (180-353)||(51066449-51066622)
chr4 (180-353)||(46494401-46494574)
chr4 (177-355)||(36192496-36192673)
chr4 (176-353)||(39863777-39863954)
chr4 (207-353)||(8740404-8740550)
chr4 (176-353)||(7173584-7173761)
chr4 (176-353)||(50905704-50905881)
chr4 (176-330)||(30970383-30970537)
chr4 (176-329)||(51713964-51714117)
chr4 (176-347)||(32139126-32139297)
chr4 (180-342)||(2294719-2294875)
chr4 (176-280)||(29576444-29576548)
chr4 (176-281)||(55231715-55231820)
chr4 (176-294)||(2570216-2570334)
chr4 (176-249)||(22304090-22304163)
chr4 (180-283)||(41523423-41523526)
chr4 (176-315)||(47626992-47627133)
chr4 (176-267)||(676770-676861)
chr4 (179-267)||(51279035-51279123)
chr4 (176-276)||(4080551-4080651)
chr4 (181-245)||(37990599-37990663)
chr4 (207-298)||(50399672-50399763)
chr4 (180-242)||(23084468-23084530)
chr4 (206-314)||(22423371-22423479)
chr4 (314-353)||(51066205-51066244)
[»] chr8 (21 HSPs)
chr8 (176-356)||(19723264-19723444)
chr8 (176-353)||(11403957-11404134)
chr8 (176-354)||(32296638-32296816)
chr8 (177-353)||(4840096-4840272)
chr8 (176-354)||(22711464-22711642)
chr8 (176-353)||(11610236-11610413)
chr8 (176-328)||(29767169-29767319)
chr8 (180-352)||(28739564-28739736)
chr8 (233-353)||(27881044-27881164)
chr8 (233-353)||(28021225-28021345)
chr8 (180-291)||(17095568-17095679)
chr8 (176-354)||(30682794-30682971)
chr8 (210-353)||(24475029-24475172)
chr8 (176-329)||(41553265-41553418)
chr8 (176-276)||(36261679-36261779)
chr8 (197-280)||(21355004-21355087)
chr8 (176-276)||(43288105-43288205)
chr8 (180-263)||(11909426-11909509)
chr8 (176-237)||(27879559-27879620)
chr8 (176-237)||(28019740-28019801)
chr8 (282-352)||(6097521-6097591)
[»] scaffold0021 (1 HSPs)
scaffold0021 (176-353)||(107691-107867)
[»] chr2 (25 HSPs)
chr2 (176-353)||(40155996-40156173)
chr2 (176-353)||(10745231-10745408)
chr2 (176-353)||(17136343-17136520)
chr2 (176-353)||(44650349-44650526)
chr2 (176-356)||(5039373-5039553)
chr2 (188-354)||(6672804-6672970)
chr2 (176-356)||(25987660-25987841)
chr2 (176-353)||(36380131-36380308)
chr2 (176-316)||(45136969-45137109)
chr2 (176-353)||(2754050-2754227)
chr2 (176-327)||(36836328-36836479)
chr2 (179-353)||(30372682-30372856)
chr2 (176-353)||(2357075-2357251)
chr2 (176-353)||(7860145-7860322)
chr2 (176-337)||(21637869-21638030)
chr2 (176-355)||(26690108-26690287)
chr2 (176-317)||(33066582-33066723)
chr2 (176-286)||(558438-558548)
chr2 (176-342)||(3200849-3201014)
chr2 (169-329)||(13047148-13047303)
chr2 (176-353)||(21487106-21487282)
chr2 (188-341)||(4553569-4553723)
chr2 (276-354)||(2098939-2099017)
chr2 (176-226)||(2098825-2098875)
chr2 (239-294)||(20961496-20961551)
[»] chr5 (10 HSPs)
chr5 (180-355)||(20983006-20983181)
chr5 (176-354)||(17064278-17064456)
chr5 (22-110)||(31640493-31640581)
chr5 (176-325)||(37976530-37976683)
chr5 (176-343)||(41910792-41910957)
chr5 (111-160)||(31640331-31640380)
chr5 (257-353)||(35237103-35237199)
chr5 (379-420)||(31638152-31638193)
chr5 (176-292)||(5009416-5009531)
chr5 (182-244)||(31673894-31673956)
[»] chr1 (17 HSPs)
chr1 (180-353)||(30054445-30054618)
chr1 (176-354)||(20014413-20014591)
chr1 (176-353)||(45323962-45324139)
chr1 (178-353)||(30370061-30370236)
chr1 (176-354)||(12025136-12025314)
chr1 (188-350)||(21090074-21090236)
chr1 (176-329)||(4573359-4573512)
chr1 (177-354)||(33763254-33763431)
chr1 (178-322)||(30850841-30850985)
chr1 (177-284)||(22024128-22024235)
chr1 (176-280)||(14498078-14498182)
chr1 (180-341)||(35617948-35618104)
chr1 (263-353)||(15034411-15034501)
chr1 (188-265)||(35371756-35371833)
chr1 (189-297)||(44438562-44438670)
chr1 (176-283)||(33762539-33762646)
chr1 (177-237)||(17015192-17015252)
[»] chr6 (9 HSPs)
chr6 (176-353)||(35163749-35163926)
chr6 (177-341)||(19686827-19686991)
chr6 (176-353)||(2711739-2711910)
chr6 (176-286)||(20685348-20685458)
chr6 (176-286)||(17948703-17948813)
chr6 (255-350)||(14496311-14496406)
chr6 (176-353)||(14505524-14505698)
chr6 (188-282)||(15070152-15070246)
chr6 (206-291)||(24336633-24336718)
[»] scaffold0691 (1 HSPs)
scaffold0691 (201-354)||(6993-7142)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 169 - 353
Target Start/End: Complemental strand, 7417938 - 7417754
Alignment:
Q  169 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 268  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  7417938 ggtaaggaaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 7417839  T
Q  269 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  7417838 ctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 8400988 - 8400810
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttt 8400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 35198898 - 35198721
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| || ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 169 - 353
Target Start/End: Complemental strand, 22856027 - 22855843
Alignment:
Q  169 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 268  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||||||||     
T  22856027 ggtaaggaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctcc 22855928  T
Q  269 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||| ||||||||| ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||  ||||||||||    
T  22855927 ctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 50823831 - 50823681
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50823831 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50823732  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttt 326  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| |||||||    
T  50823731 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 326
Target Start/End: Original strand, 50852029 - 50852179
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50852029 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50852128  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttt 326  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| |||||||    
T  50852129 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 34824685 - 34824512
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||| |||  ||||||| | ||||||||||||||||||| || |||||||| ||||||||||| |||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 341
Target Start/End: Complemental strand, 52545454 - 52545289
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||  || ||||||||||||| ||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 341  Q
    ||||||||||| |||||||||||  || |||||||||||||||||||| ||||||||| |||||||    
T  52545354 ggcactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaa 52545289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 180 - 342
Target Start/End: Complemental strand, 55468129 - 55467966
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcggg-ctcaaagagcacttacaaatataattacatttacctcactccaaaggc 278  Q
    ||||||| ||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||  || ||||||||||||| ||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  279 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 342  Q
    | ||| || |||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||    
T  55468029 attagtggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaag 55467966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 180 - 338
Target Start/End: Original strand, 43334057 - 43334215
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagac 338  Q
    ||||||| |||||||| ||||||||||||||||||| || |||| ||||| | ||||||    
T  43334157 ctagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 215 - 354
Target Start/End: Original strand, 48077979 - 48078118
Alignment:
Q  215 agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattca 314  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||| |  ||||||||||| ||||||||| |||||    
T  48077979 agggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattca 48078078  T
Q  315 agacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||||||| ||||| |||||||||||| ||||| |||||    
T  48078079 agacctgtcattttaccactagaccaagcctttgaagttt 48078118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 22371721 - 22371832
Alignment:
Q  169 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 268  Q
    ||||||| |||||||||| ||||||||||||| ||||||| || | |||||||| ||||||| ||||||||||||||||||  ||||||||||||||||     
T  22371721 ggtaaggtaaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctcc 22371820  T
Q  269 ctccaaaggcac 280  Q
    ||||||||||||    
T  22371821 ctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 262  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 324
Target Start/End: Original strand, 50726003 - 50726144
Alignment:
Q  183 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 282  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50726003 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50726102  T
Q  283 gcggagctcgaacccgggttctctcggattcaagacctgtct 324  Q
     ||| |||||||||||  ||||||||||||||||||||||||    
T  50726103 acggggctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 50786845 - 50786704
Alignment:
Q  183 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 282  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50786845 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50786746  T
Q  283 gcggagctcgaacccgggttctctcggattcaagacctgtct 324  Q
     ||| |||||||||||  ||||||||||||||||||||||||    
T  50786745 acggggctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 262  Q
    ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 262  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 19872482 - 19872592
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||||||||||  |||||||| |||||||||  ||||||  |||||||  |||||||    
T  19872482 aaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T
Q  276 ggcactagcgg 286  Q
    ||||| |||||    
T  19872582 ggcacaagcgg 19872592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 29635981 - 29635883
Alignment:
Q  196 tggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 294  Q
    ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||  |||||||    
T  29635981 tggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 25910665 - 25910739
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaat 250  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||| |||||| ||||||||||||||||||||    
T  25910665 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaat 25910739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 42876343 - 42876189
Alignment:
Q  181 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 280  Q
    |||||| |||| |||||||| || |||||||| |||||||||| |||  | ||||||||||||||||||  ||||||||||||||||  || |||| |||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacac 42876244  T
Q  281 tagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcacta 335  Q
    |||  | |||||||| || | || |||| || ||||| || |||||||| |||||    
T  42876243 tagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccacta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 354
Target Start/End: Original strand, 39438915 - 39438996
Alignment:
Q  273 aaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    |||||||||||||||  | ||||| || ||||||||||||||||| ||||||||||| ||||| | |||| ||||| |||||    
T  39438915 aaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagttt 39438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 773710 - 773666
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa 220  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||||    
T  773710 aaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 35109824 - 35109647
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  35109824 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 35109725  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  35109724 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 38265237 - 38265413
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  38265237 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 38265336  T
Q  277 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  38265337 gcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 16059356 - 16059529
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| || ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 34721967 - 34721790
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 21577097 - 21577274
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||||    
T  21577097 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaa 21577196  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  21577197 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 41151306 - 41151139
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaata-taattacatttacctcactccaa 274  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||    
T  41151306 aaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaa 41151207  T
Q  275 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 342  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41151206 agacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 38405157 - 38405330
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||  |||||||| ||  ||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||    
T  38405257 ctagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 45278585 - 45278411
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| || || ||||    
T  45278585 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaa 45278486  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 350  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||    
T  45278485 ggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 18116947 - 18117120
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| |||||||| |||||  |||||||||||| ||||||  |||||||||||||||| ||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 182 - 353
Target Start/End: Complemental strand, 11216896 - 11216725
Alignment:
Q  182 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcact 281  Q
    ||||| |||||| ||| || || ||||||| |||| ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  282 agcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |  || |||||||||||||||||||| |||||||||||||||  |||| |||||||||||  ||||||||||    
T  11216796 aatggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 12472249 - 12472115
Alignment:
Q  181 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 280  Q
    |||||| ||||||||||||  |||||||||||  |||||||||||||| ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  281 tagcggagctcgaacccgggttctctcggattcaa 315  Q
    ||| || ||||||||||||||||||||||||||||    
T  12472149 tagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 245263 - 245383
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||     
T  245263 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaag 245362  T
Q  276 ggcactagcggagctcgaacc 296  Q
    ||||||||||| |||||||||    
T  245363 ggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  276 ggcactagcggagctc 291  Q
    | ||||||||| ||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 180 - 350
Target Start/End: Complemental strand, 48176529 - 48176359
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggt-agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 278  Q
    ||||||| ||||||||||||| ||||||||||||  |||||| |||||| |||||||| | ||||||||||  || |||||||||||||  |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  279 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 350  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||||||| || ||||||||| |||||||    
T  48176429 actagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||| |||||||| | ||||| |||||||||||| |||||||| ||||| | |||||| |||  ||||||||||||| || ||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  276 ggcactagcggagctcgaacccgggttctctcg 308  Q
    |||| ||| |||| |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 40038713 - 40038621
Alignment:
Q  261 ttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||| || ||||||||||| |||  || |||  | ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||| |||||||   |    ||||||||||||||||||||||||||||  || ||||||||||||| ||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 51066622 - 51066449
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51066522 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 46494401 - 46494574
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  46494501 ctagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 36192673 - 36192496
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  277 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 355  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||  ||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac-agactaaacctttggagtttt 36192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 39863777 - 39863954
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||| || |||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 207 - 353
Target Start/End: Complemental strand, 8740550 - 8740404
Alignment:
Q  207 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctct 306  Q
    ||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  307 cggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8740450 cggattcaagacctgtctttttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 7173584 - 7173761
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||  || | |||||||||||  ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||||||  || |||||  ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 50905881 - 50905704
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||  |||||||| |||||| ||||| | ||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||    
T  50905881 aaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaa 50905782  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  50905781 ggcactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 30970383 - 30970537
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||| || ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttat 330  Q
    |||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcggattcaagacctgtcattttat 30970537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 51713964 - 51714117
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||  || ||| ||||||||| || ||||    
T  51713964 aaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaa 51714063  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 329  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  51714064 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 176 - 347
Target Start/End: Complemental strand, 32139297 - 32139126
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||| |||||| ||| ||||||||| |||||||||||| || |||||||||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  32139297 aaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 32139198  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtcttt 347  Q
    | ||||||||| | |||||||| |||||||||||||||| |||||||| ||||| |||||||||||| ||||    
T  32139197 gacactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 2294719 - 2294875
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||| ||||||||||| || |||||       |||||||||||||||  |||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacacttg------taattacatttaccttcctccaaaggca 2294812  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 342  Q
    |||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaag 2294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 29576548 - 29576444
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  29576548 aaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaa 29576449  T
Q  276 ggcac 280  Q
    |||||    
T  29576448 ggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 55231820 - 55231715
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||  || ||||||||||||| || ||||    
T  55231820 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaa 55231721  T
Q  276 ggcact 281  Q
    ||||||    
T  55231720 ggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 294
Target Start/End: Complemental strand, 2570334 - 2570216
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||||| || ||| ||  ||| ||| ||||||||| |||||||    
T  2570334 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaa 2570235  T
Q  276 ggcactagcggagctcgaa 294  Q
    ||||| |||||||||||||    
T  2570234 ggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 22304090 - 22304163
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 249  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 22304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 41523526 - 41523423
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||  || ||||||||||||| |||||||| ||    
T  41523526 ttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagaca 41523427  T
Q  280 ctag 283  Q
    ||||    
T  41523426 ctag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 47626992 - 47627133
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||| |||||||  ||||||||||| |||||||||||||| | |||||||| | ||| | |  || ||||||||||||| || ||||    
T  47626992 aaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T
Q  276 ggcactagcggag--ctcgaacccgggttctctcggattcaa 315  Q
    |||||||| || |  |||||| ||||||||||||||||||||    
T  47627092 ggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 676861 - 676770
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 267  Q
    ||||||||| | | |||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||  || ||||| |||||||    
T  676861 aaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctc 676770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 51279035 - 51279123
Alignment:
Q  179 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 267  Q
    |||||||| ||||||||||||| |  | |||||||| ||||||||||| ||||||||||||||||||||||  || ||||||| |||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctc 51279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 4080551 - 4080651
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| |  ||||||||||||  ||| ||||||  || |||||| ||| | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4080551 aaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T
Q  276 g 276  Q
    |    
T  4080651 g 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 37990599 - 37990663
Alignment:
Q  181 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactta 245  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||||||| |||||    
T  37990599 tttaggatgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 50399672 - 50399763
Alignment:
Q  207 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccg 298  Q
    |||||||||| |||||| ||  |||||||||| ||||||||||  || ||||||||||||  ||||||  |||||||||| |||||||||||    
T  50399672 tccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 23084468 - 23084530
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcac 242  Q
    ||||||| ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||    
T  23084468 ttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 22423479 - 22423371
Alignment:
Q  206 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctc 305  Q
    |||||| | ||||||||||||||  | |||||| ||||||||||  || ||||||||||||| ||||||||| |||| | | ||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  306 tcggattca 314  Q
    || ||||||    
T  22423379 tcagattca 22423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 51066244 - 51066205
Alignment:
Q  314 aagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtt 51066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 176 - 356
Target Start/End: Complemental strand, 19723444 - 19723264
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||||||    
T  19723444 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 19723345  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 356  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  19723344 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttttt 19723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 11404134 - 11403957
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  11404134 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 11404035  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    | ||||||||  |||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  11404034 gacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 176 - 354
Target Start/End: Original strand, 32296638 - 32296816
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||||||| | ||| ||||||||||||||||  |||||||||||||||||||| |||||||||||  |||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggagttt 32296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 4840272 - 4840096
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||||| || ||||||||||||||||||   |||| ||||||||||| ||||||||    
T  4840272 aaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaag 4840173  T
Q  277 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||    
T  4840172 gcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 22711642 - 22711464
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  22711642 aaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    |||| |||  |  ||| |||||| |||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  22711542 ggcattagttggactcaaacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 22711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 11610413 - 11610236
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||||||| ||| ||| ||||||||  |||||||    
T  11610413 aaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaa 11610314  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||  ||||||| ||| | |||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  11610313 ggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 29767319 - 29767169
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||  ||||||||| || ||||    
T  29767319 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcccttcaaa 29767222  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 328  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  29767221 ggcactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 180 - 352
Target Start/End: Original strand, 28739564 - 28739736
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||| |  |||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 352  Q
    |||| || ||| |||||| |||||||| | |||||||||||||| ||||| |||||||||||| |||||||||    
T  28739664 ctagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 27881044 - 27881164
Alignment:
Q  233 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 332  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  333 ctagaccaagtctttggagtt 353  Q
    |||||||||| ||||||||||    
T  27881144 ctagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 28021225 - 28021345
Alignment:
Q  233 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 332  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  333 ctagaccaagtctttggagtt 353  Q
    |||||||||| ||||||||||    
T  28021325 ctagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  280 ctagcggagctc 291  Q
    ||||||| ||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 30682971 - 30682794
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||  || ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtg-cccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||| || || |||||||| |||| ||||| | |||||||| ||| | || || |||||||||||| |||||||||||    
T  30682872 ggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttggagttt 30682794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 210 - 353
Target Start/End: Original strand, 24475029 - 24475172
Alignment:
Q  210 aaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcgg 309  Q
    |||| ||| |||||||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||  ||  |||| ||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcgg 24475128  T
Q  310 attcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||||||||||| | |||  ||||||||||| ||||||||||    
T  24475129 attcaagacctgtcatcttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 41553418 - 41553265
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||||||||||||  |||||| |||| |||||||||||||| ||||||||| ||||||||||  || |||||||||| |  |||||||    
T  41553418 aaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaa 41553319  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 329  Q
    | || ||| ||  ||||||| |||||||||||| ||||||||||| || |||||    
T  41553318 gacattagtgggactcgaactcgggttctctcgaattcaagacctatcatttta 41553265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 36261779 - 36261679
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36261779 aaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T
Q  276 g 276  Q
    |    
T  36261679 g 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  197 ggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 280  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 43288205 - 43288105
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||| |||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||| | || |||||||  |||||||||||||||| |||||||    
T  43288205 aaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T
Q  276 g 276  Q
    |    
T  43288105 g 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattta 263  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||  || |||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 27879559 - 27879620
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 237  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  27879559 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 28019740 - 28019801
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 237  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  28019740 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 6097591 - 6097521
Alignment:
Q  282 agcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 352  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||| ||  ||||||||  ||||||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 107691 - 107867
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  107691 aaaattttaggt-gaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 40156173 - 40155996
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  40156173 aaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 40156074  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  40156073 ggcactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 10745231 - 10745408
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||    
T  10745231 aaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaa 10745330  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||    
T  10745331 ggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 17136520 - 17136343
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17136520 aaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 17136421  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||| ||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  17136420 ggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 44650526 - 44650349
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 176 - 356
Target Start/End: Complemental strand, 5039553 - 5039373
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||  ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||| ||| |||    
T  5039553 aaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaa 5039454  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 356  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  5039453 agcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggagttttt 5039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 188 - 354
Target Start/End: Original strand, 6672804 - 6672970
Alignment:
Q  188 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 287  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||||||     
T  6672804 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggg 6672903  T
Q  288 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  6672904 gcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 6672970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 176 - 356
Target Start/End: Original strand, 25987660 - 25987841
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa-gaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 274  Q
    ||||||||||| ||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  25987660 aaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaa 25987759  T
Q  275 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 356  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |  | |||| |||||||||||||    
T  25987760 aggcactagcggggctcgaacccgagttctctcggattcaagacctgtctttttaccattgtatcaagcctttggagttttt 25987841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 36380131 - 36380308
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||    
T  36380131 aaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaa 36380230  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| | || |||||| ||| ||||| ||||||||||||||| |||| |||||||||||| ||||| ||||    
T  36380231 ggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaagtt 36380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 45136969 - 45137109
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  45136969 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaag 316  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  45137069 ggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 2754050 - 2754227
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2754050 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2754149  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||| ||| ||  |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||    
T  2754150 ggcattagtgggactcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 36836328 - 36836479
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 327  Q
    ||||| |||||  ||||||| |||||||||||||||||||||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 30372682 - 30372856
Alignment:
Q  179 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 278  Q
    |||||||| |||||| |||||  |||||| ||||| | ||||||||||||||||||||||||||| ||||| ||| |||||||||||||  |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  279 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||||||||||| || ||||||| ||||||||||| |||||||| |||||||||||  ||||||||||    
T  30372782 actagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 2357075 - 2357251
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||  |||||| |||| ||||||   || ||||||||||||| |||||||    
T  2357075 aaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaa 2357173  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    || ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  2357174 ggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 7860145 - 7860322
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||||||||||  ||||||||| || | |||||||||| || ||| | ||||||||||||||| ||||||||||| ||  |||||||||||| |||||||    
T  7860145 aaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaa 7860244  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7860245 ggcactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 21638030 - 21637869
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||||  || ||||||||||||| |||||||    
T  21638030 aaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 21637931  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactaga 337  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||| || ||||| |||||||    
T  21637930 ggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 26690287 - 26690108
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||||  | |||||| ||||||||||  |||||||||||||||| |||||||    
T  26690287 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaa 26690188  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 355  Q
     ||||||||||  ||||||||| | |||||||| ||| || ||||||||||||| |||||||||||| ||||||||||||    
T  26690187 agcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggagtttt 26690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 33066723 - 33066582
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaaga 317  Q
    | |||||| | ||||||||||||| |||||||  ||||||||    
T  33066623 gacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 558438 - 558548
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||| |||||||    
T  558438 aaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaa 558537  T
Q  276 ggcactagcgg 286  Q
    |||||||||||    
T  558538 ggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 3201014 - 3200849
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||||||||||  |||| ||||||| ||||||| |||| || ||||| |||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  3201014 aaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 342  Q
    ||||||||||  ||||||| || ||||||||  ||||||||| ||||||||||| ||| ||||||||    
T  3200914 ggcactagcgaggctcgaatccaggttctcttagattcaagatctgtctttttaccac-agaccaag 3200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 13047148 - 13047303
Alignment:
Q  169 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 268  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| |||||||| ||| ||||||||||||||||||   |  |||||| |||||||||     
T  13047148 ggtaaggtaaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactta---aggtaattatatttacctcc 13047244  T
Q  269 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 329  Q
    |||||||| ||   |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  13047245 ctccaaagacat--gcggggctcgaacccggattctctcgaattcaagacctgtcttttta 13047303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 21487282 - 21487106
Alignment:
Q  176 aaaattttaggttgagggg-atggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 274  Q
    ||||||||||| ||||||| |||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  21487282 aaaattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaa 21487183  T
Q  275 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||  || || ||||||| |||   |||  ||| |||||||||||||||| ||||| |||| ||| ||  ||||||||||    
T  21487182 agataccagtggagctcaaacttaggt--tcttggattcaagacctgtcattttaccacttgactaaacctttggagtt 21487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 4553569 - 4553723
Alignment:
Q  188 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc-actccaaaggcactagcgg 286  Q
    ||||||||||||| ||||||| |||  || |||||||| ||| ||||||||| |||||||||| || ||| |||||||||  |||||||  ||||||| |    
T  4553569 tgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaacactagctg 4553668  T
Q  287 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 341  Q
    | |||||||| |   ||||||| ||||||||| |||||||||| || ||||||||    
T  4553669 aactcgaacctgaaatctctcgaattcaagacatgtctttttaccattagaccaa 4553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 2098939 - 2099017
Alignment:
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| || ||||| || ||||||||| |||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagttt 2099017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagacctt 226  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  239 gcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 294  Q
    ||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 180 - 355
Target Start/End: Original strand, 20983006 - 20983181
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 355  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20983106 ctagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggagtttt 20983181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 17064456 - 17064278
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||  || ||||||||||||| |||||||    
T  17064456 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaa 17064357  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  17064356 ggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagttt 17064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 31640581 - 31640493
Alignment:
Q  22 acgcgatcctgtgcaagaacaaacatggtcatttcttcaggtgctcacaaacgcagctggtcatgactttcttctggactcctgactaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  31640581 acgcgatcctgtgcaagaacaaacatggtcatttcttcaggtgctcgcaaacgcagctggtcatgactttcttctggactcttgactaa 31640493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 176 - 325
Target Start/End: Complemental strand, 37976683 - 37976530
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattac----atttacctcactc 271  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||||||||||| ||||||||||||  || ||||    ||||||||| ||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  272 caaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 325  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 41910957 - 41910792
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||| ||||| || |||||| |||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctc-ctccaaa 41910859  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagt 343  Q
    |  |||| |  | ||| |||||   ||||||| ||||||||||||||||||||| ||||||| |||||    
T  41910858 gatactaac-aaactcaaacccaaattctctcagattcaagacctgtctttttaccactagagcaagt 41910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 31640380 - 31640331
Alignment:
Q  111 gaaaagagttagcgaccaagaaattggccaagctattttcttcaaaggta 160  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31640380 gaaaagagttagtgaccaagaaattggcgaagctattttcttcaaaggta 31640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 35237103 - 35237199
Alignment:
Q  257 acatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||||||| || ||||| ||||||||| ||||||| || | |||||||| ||||||||| | || ||||| |||||||||||| |||| |||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagtt 35237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 31638193 - 31638152
Alignment:
Q  379 tagtaggtaagctcatataaacataaaataagtcaattccct 420  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  31638193 tagtaggtaagctcacataaacataaaataagtcaattccct 31638152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| || ||||||| ||  ||||| ||||| | |||||||||||||  ||||||| || ||||||| ||| ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  276 ggcactagcggagctcg 292  Q
    | ||||| ||| |||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 31673956 - 31673894
Alignment:
Q  182 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactt 244  Q
    ||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||||||| ||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt 31673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 30054445 - 30054618
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttggagtt 30054618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 20014591 - 20014413
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||    
T  20014591 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaa 20014492  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    || ||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  20014491 ggtactagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttggagttt 20014413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 45324139 - 45323962
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||  || ||||||||||||| |||||||    
T  45324139 aaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaa 45324040  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
     |||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  45324039 agcactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttggagtt 45323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 30370061 - 30370236
Alignment:
Q  178 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 277  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||     
T  30370061 aattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 30370160  T
Q  278 cactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||||| || |||||||||||| |||||||| |||||| || |||||||||| |||||||||||| ||||||||||    
T  30370161 cactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggagtt 30370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 12025314 - 12025136
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||| || |||||||||  |||||||||||||||  |||||||    
T  12025314 aaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaa 12025215  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    |||||||  || |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||    
T  12025214 ggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggagttt 12025136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 350
Target Start/End: Complemental strand, 21090236 - 21090074
Alignment:
Q  188 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 287  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||| |||||||||||     
T  21090236 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggg 21090137  T
Q  288 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 350  Q
    |||||||||||  |||||||| |||||||||||||| ||||| |||||||||||| |||||||    
T  21090136 gctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 4573512 - 4573359
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||| ||| | ||||||||   |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  4573512 aaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 4573413  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 329  Q
    | || ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4573412 gacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 177 - 354
Target Start/End: Original strand, 33763254 - 33763431
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| |||||||||| || |||||| ||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| ||||    
T  33763254 aaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaag 33763353  T
Q  277 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    |||||||||| |||||||||  | |||||||| ||||||||||||||||||||  ||||||||||  |||| ||||||    
T  33763354 gcactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaacctttagagttt 33763431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 322
Target Start/End: Original strand, 30850841 - 30850985
Alignment:
Q  178 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 277  Q
    ||||||||| ||||||||||||| |||||||||||  ||| |||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  278 cactagcggagctcgaacccgggttctctcggattcaagacctgt 322  Q
    ||||| ||| ||||||||||| ||||||||||||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 22024235 - 22024128
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  22024235 aaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaag 22024136  T
Q  277 gcactagc 284  Q
    ||||||||    
T  22024135 gcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 14498078 - 14498182
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||||||||| || |||||||||||||||||||  |||||||||||||||| |||||||    
T  14498078 aaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaa 14498177  T
Q  276 ggcac 280  Q
    |||||    
T  14498178 ggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 341
Target Start/End: Complemental strand, 35618104 - 35617948
Alignment:
Q  180 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 279  Q
    ||||||| ||||||||||||  |||||||||| | | ||||||||||||||||||||||||||||||||    |  ||||||||| || ||  |||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaa----agctacatttacatccct-gaaaggca 35618010  T
Q  280 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 341  Q
    ||| ||||||||||| |  |||||||| |||||||||||||||| ||||| |||||||||||    
T  35618009 ctaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaa 35617948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 15034501 - 15034411
Alignment:
Q  263 acctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    ||||| |||||||||||||||  | ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 35371756 - 35371833
Alignment:
Q  188 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacc 265  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  35371756 tgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  189 gaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggag 288  Q
    |||||||||||  |||||| ||||| ||||||||||||||   | ||||| ||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  289 ctcgaaccc 297  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 33762539 - 33762646
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||||||||| || |||||||||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| |||    
T  33762539 aaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaa 33762638  T
Q  276 ggcactag 283  Q
    ||||||||    
T  33762639 ggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 17015252 - 17015192
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 237  Q
    |||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  17015252 aaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 35163749 - 35163926
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  35163749 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 35163848  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
    |||| ||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35163849 ggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35163926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 177 - 341
Target Start/End: Original strand, 19686827 - 19686991
Alignment:
Q  177 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 276  Q
    |||||||||| |||||||||| || ||||||| |||| ||| |||| ||||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  19686827 aaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaag 19686926  T
Q  277 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 341  Q
    ||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||    
T  19686927 gcactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaa 19686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 2711739 - 2711910
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| |||||||||||||      ||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2711739 aaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2711832  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
     ||||||| || ||||||| || |||||| |||||||||||||||||| ||||| |||||||||||| |||| |||||    
T  2711833 agcactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagcctttcgagtt 2711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 20685458 - 20685348
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  20685458 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T
Q  276 ggcactagcgg 286  Q
    |||||||||||    
T  20685358 ggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 17948813 - 17948703
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    ||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17948813 aaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaa 17948714  T
Q  276 ggcactagcgg 286  Q
    | |||||||||    
T  17948713 gacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 255 - 350
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  255 ttacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 350  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 14505524 - 14505698
Alignment:
Q  176 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 275  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||| ||||| || ||||||  | |||||||  || ||||||||||||| |||||||    
T  14505524 aaaattttaggt-gaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaa 14505621  T
Q  276 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 353  Q
     |||||||||| |||||||  |||| |||||||||||||| || ||| |||||| | |||||||||| ||||||||||    
T  14505622 agcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttggagtt 14505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 15070246 - 15070152
Alignment:
Q  188 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 282  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||    
T  15070246 tgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 24336718 - 24336633
Alignment:
Q  206 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 291  Q
    |||||||| |||||||| |||| |||||||| | ||||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 6993 - 7142
Alignment:
Q  201 gcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccggg 300  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||  ||||||||||||| || ||||||| ||||||||||  |||||||||||     
T  6993 gcccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccgga 7092  T
Q  301 ttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 354  Q
    |||||||   ||| || |||||||||||| ||||| | |||| |||||||||||    
T  7093 ttctctc---ttcgagtcctgtctttttaccacta-aacaagcctttggagttt 7142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University