View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3671_low_5 (Length: 306)
Name: NF3671_low_5
Description: NF3671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3671_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36953288 - 36952980
Alignment:
| Q |
1 |
aatccaccaatattccaattaatacactcctaaagataaatttttcccaagtaatta----taccaaactgaatttgattgtgggaaaatgcacaagcta |
96 |
Q |
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| T |
36953288 |
aatccaccaatattccaattaatacactcctaaagataa-tttttcccaagtaattaattataccaaactgaatttgattgtgggaaaatgcacaagcta |
36953190 |
T |
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| Q |
97 |
caaacctacaactgatcaagtagtgatgttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatacttctagcaagcattt |
196 |
Q |
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| T |
36953189 |
caaacctacaactgatcaagtagtgaagttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatgcttctagcaagcattt |
36953090 |
T |
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| Q |
197 |
cttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaatattctcattaacaat |
296 |
Q |
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| T |
36953089 |
cttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaatattctcattaacaat |
36952990 |
T |
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| Q |
297 |
ctctttctct |
306 |
Q |
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|||||||||| |
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| T |
36952989 |
ctctttctct |
36952980 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 22870048 - 22870136
Alignment:
| Q |
192 |
catttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaa |
280 |
Q |
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| T |
22870048 |
catttcctgataccttctataagattcctccttttcaaccttaaacttctcatgacaatttgcaatgaacatttctgccaacatatcaa |
22870136 |
T |
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