View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3671_low_6 (Length: 250)
Name: NF3671_low_6
Description: NF3671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3671_low_6 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16975250 - 16975492
Alignment:
| Q |
1 |
ttttatttttaatactagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975250 |
ttttatttttaatactagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagttt |
16975349 |
T |
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| Q |
101 |
atttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatcggtatagttaaaactaagaaattaaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16975350 |
atttcctataaaatgtcctcatggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatcggtgtagttaaaactaagaaattaaa |
16975449 |
T |
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| Q |
201 |
aagttaattcttgtcaatgaagtagtatatgtaagtataattt |
243 |
Q |
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| T |
16975450 |
aagttaattcttgtcaatgaagtagtatatgtaagtataattt |
16975492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 25389186 - 25389359
Alignment:
| Q |
16 |
tagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatg |
115 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389186 |
tagtatatatgttgatacattgactagaccacatcaaccaa----------tagaaattcaacaaactaagaagataaagagtttatttcctataaaatg |
25389275 |
T |
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| Q |
116 |
tcctcgtggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatcggtatagttaaaactaagaaattaa |
199 |
Q |
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| T |
25389276 |
tccatatggatcttgtttcttcccatatgttccctgtttcatcattatcaatttttatcgatgtaattaaaactaagaaattaa |
25389359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 641 - 397
Alignment:
| Q |
1 |
ttttatttttaatactagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
641 |
ttttatttttaatactagtatatatgttgatatattgattaggccacatccaccaatcac--ccaatagaaattcaacaaactaagaagataaagagctt |
544 |
T |
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| Q |
101 |
at----ttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatcggtatagttaaaactaagaaat |
196 |
Q |
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|| |||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| || ||||||||||||||| |
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| T |
543 |
atatatttcctataaaatgtcctcatcgatgttgtttcttcccatatgttccatgtttcatcattctccacttttatcggtgtaattaaaactaagaaat |
444 |
T |
|
| Q |
197 |
taaaaagttaattcttgtcaatgaagtagtatatgtaagtataattt |
243 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
443 |
taaaaagctaattcttgtcaatgaagtagtatatgtgagtataattt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 38437689 - 38437909
Alignment:
| Q |
16 |
tagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatg |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38437689 |
tagtatatatgttgatacattgactagaccacatccaccaa----------tagaaattcaacaaactaagaagataaaaagtttatttcctataaaatg |
38437778 |
T |
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| Q |
116 |
tcctcgtggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatcggtatagttaaaactaagaaattaaaaagttaattcttgtc |
215 |
Q |
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||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||| | || ||||||||||||||||||||||||||||||| || |
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| T |
38437779 |
tccatatggatcttgtttcttcccatatgttccctgtttcatcattatccatttttatcgatgtaattaaaactaagaaattaaaaagttaattcttttc |
38437878 |
T |
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| Q |
216 |
aatgaagta---gtatatgtaagtataattt |
243 |
Q |
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||||||||| |||||||| |||||||||| |
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| T |
38437879 |
aatgaagtagtggtatatgtgagtataattt |
38437909 |
T |
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