View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3671_low_8 (Length: 202)
Name: NF3671_low_8
Description: NF3671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3671_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 47211867 - 47212036
Alignment:
| Q |
19 |
ctctacacattgcatagccacttcagccaaagcttcaacttcactttcatcacagcctccatctaaggtggggtccataatttcattaatccatgaaatt |
118 |
Q |
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| T |
47211867 |
ctctacacattgcatagccacttcagccaaagcttcaacttcactttcatcacagcctccatctaaggtggggtccataatttcattaatccatgaaatt |
47211966 |
T |
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| Q |
119 |
cttttgtatcttttctctctcaaccatataaccaaacctagtttatcattacccatatcaacatcctttg |
188 |
Q |
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| T |
47211967 |
cttttgtatcttttctctctcaaccatataaccaaacctagtttatcattacccatatcaacatcctttg |
47212036 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 29212752 - 29212822
Alignment:
| Q |
63 |
tttcatcacagcctccatctaaggtggggtccataatttcattaatccatgaaattcttttgtatcttttct |
134 |
Q |
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| T |
29212752 |
tttcatcacaacctccttttaaggtggggtccataatttcattaa-ccatgaaatgattttatctcttttct |
29212822 |
T |
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