View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3672_high_1 (Length: 480)

Name: NF3672_high_1
Description: NF3672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3672_high_1
NF3672_high_1
[»] chr7 (12 HSPs)
chr7 (9-464)||(22933168-22933623)
chr7 (9-462)||(22921968-22922418)
chr7 (239-332)||(22858498-22858591)
chr7 (246-332)||(22815070-22815156)
chr7 (270-332)||(22880631-22880693)
chr7 (246-332)||(22889335-22889421)
chr7 (246-330)||(22885637-22885721)
chr7 (246-332)||(22831074-22831160)
chr7 (246-291)||(22840095-22840140)
chr7 (246-291)||(22893987-22894032)
chr7 (246-291)||(22809687-22809732)
chr7 (246-291)||(22898306-22898351)
[»] chr5 (2 HSPs)
chr5 (10-464)||(15628047-15628504)
chr5 (386-440)||(17394032-17394086)
[»] chr1 (1 HSPs)
chr1 (246-332)||(21150585-21150671)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Complemental strand, 22933623 - 22933168
Alignment:
Q  9 agcagagaaaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttagttgaagttggagaaagt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22933623 agcagagaaaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttaattgaagttggagaaagt 22933524  T
Q  109 gtaacactaataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaatattaagatcttgtttggttgaattatcagtgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22933523 gtaacactaataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaatattaagatcttgtttggttgaattatcagtgt 22933424  T
Q  209 aataaccagcaggaacagaagcatttgacctcaaactattgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtc 308  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22933423 aataaccagcagtaacagaagcatttgacctcaaactattgatgtctataccaacatggttatcattaatatcatcaaactcaaagtcttgagcagtgtc 22933324  T
Q  309 aaactcaacagcaaaaatatggttagagaaattaccaaaaacattgcttgcattgaaaagaccaagatactgaataggtaaagctttgagatcctttgta 408  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||    
T  22933323 aaactcgacagcaaaaatatggttagagaaattaccaaaaacattgcttgcattgaaaagaccaagatattgaataggtaaagcattgagatccttagta 22933224  T
Q  409 ggggctattgtgaaagccatgccatgaccaccaactctaggatactcaggaacaac 464  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22933223 ggtgctattgtgaaagccatgccatgaccaccaactctaggatactcaggaacaac 22933168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 22921968 - 22922418
Alignment:
Q  9 agcagagaaaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttagttgaagttggagaaagt 108  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||| | ||| || |||||||| || ||| | |||||||| ||||||    
T  22921968 agcagagaaaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagt 22922067  T
Q  109 gtaacactaataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaatattaagatcttgtttggttgaattatcagtgt 208  Q
    |||||||||||||| | ||||||||||||||||||||||||||| | ||||||||| |||| ||||||| ||| ||  ||     |   || |||| | |    
T  22922068 gtaacactaataagttccaatgaagaatcataatcaacccaaactaaaattggttttccacctttaatactaatattatgaaccatatcatcatcactat 22922167  T
Q  209 aataaccagcaggaacagaagcatttgacctcaaactattgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtc 308  Q
    |||||||||||| || ||  |||||||| | || |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  22922168 aataaccagcagtaatagttgcatttgaacgcatactattaatatctataccaacatggttatcattaatatcaccaaactcaaaatcttgaacagtgtc 22922267  T
Q  309 aaactcaacagcaaaaatatggttagagaaattaccaaaaacattgcttgcattgaaaagaccaagatactgaataggtaaagctttgagatcctttgta 408  Q
    ||||||||||||||||| ||||||||||||||||||   |||||  |||| ||| | |||||||||||| ||| ||||||||||||||||||| |||| |    
T  22922268 aaactcaacagcaaaaagatggttagagaaattacc---aacatcacttgaattcagaagaccaagatattgactaggtaaagctttgagatcttttgaa 22922364  T
Q  409 ggggctattgtgaaagccatgccatgaccaccaactctaggatactcaggaaca 462  Q
    ||| |||| || |||||||||||||| ||||||| | ||||||| |||||||||    
T  22922365 gggactatagtaaaagccatgccatggccaccaagtttaggatattcaggaaca 22922418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 22858498 - 22858591
Alignment:
Q  239 tcaaactattgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    ||||| |||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||||  |||||||| |||||||||||| | ||||||    
T  22858498 tcaaattattgatgtcaataccagcatggttattattgatatcatcaaactcaagatcttgaatagtgtcaagctcaacagcaaacacatggtt 22858591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 22815070 - 22815156
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    |||||| || |||||||||||||||||||| |||||||||||||  |||||||||  |||||||| ||||||| |||||| ||||||    
T  22815070 attgatatcgataccaacatggttatcattgatatcatcaaactgcaaatcttgacgagtgtcaagctcaacaccaaaaacatggtt 22815156  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 22880631 - 22880693
Alignment:
Q  270 atcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  22880631 atcattgatatcgtcaaactcaaaatcttgaacagtgtcaaactcaacagcaaaaacatggtt 22880693  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 22889335 - 22889421
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    |||||| || || |||||||||||||| || ||||||||||||||||||| ||||  |||||||| ||||||| |||||| ||||||    
T  22889335 attgatatcaattccaacatggttatcgttgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggtt 22889421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 22885637 - 22885721
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatgg 330  Q
    |||||| || ||||||| |||||||||||| || |||||||||||||||| |||| ||||||||| ||||| | |||||| ||||    
T  22885637 attgatatcaataccaatatggttatcattgatttcatcaaactcaaaattttgatcagtgtcaagctcaataccaaaaacatgg 22885721  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 22831074 - 22831160
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    |||||| || || |||||||| |||||||| ||||||||||||||||||| || |  |||||||| ||||||| |||||| ||||||    
T  22831074 attgatatcaattccaacatgattatcattgatatcatcaaactcaaaatttttacgagtgtcaagctcaacaccaaaaacatggtt 22831160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 22840095 - 22840140
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactca 291  Q
    |||||| || |||||||||||||||||||| |||||||||||||||    
T  22840095 attgatatcaataccaacatggttatcattgatatcatcaaactca 22840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 22893987 - 22894032
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactca 291  Q
    |||||| || |||||||||||||||||||| |||||||||||||||    
T  22893987 attgatatcaataccaacatggttatcattgatatcatcaaactca 22894032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 22809687 - 22809732
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactca 291  Q
    |||||| || ||||||| |||||||||||| |||||||||||||||    
T  22809687 attgatatcaataccaatatggttatcattgatatcatcaaactca 22809732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 22898306 - 22898351
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactca 291  Q
    |||||| || |||||||||||||||||||| ||||||| |||||||    
T  22898306 attgatatcaataccaacatggttatcattgatatcattaaactca 22898351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 15628047 - 15628504
Alignment:
Q  10 gcagagaaaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttagttgaagttggagaaagtg 109  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||   ||||||||||||  | |||||||| ||||| |||||||||||||||||||    
T  15628047 gcagagaatccaacatacatagtatcatgaaaaataggcgatagatcggtatgaaaggacaaagttggtttttttggttttgttgaagttggagaaagtg 15628146  T
Q  110 taacactaataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaatattaaga---tcttgtttggttga---attatc 203  Q
    ||||||||| |||||| | |||||||||||||||||||||| | |||||||||||||||||||| |||| ||||   | ||||||||||||   ||||||    
T  15628147 taacactaacaagatttattgaagaatcataatcaacccaagctagaattggtttcccacttttgatatcaagatgttgttgtttggttgaatcattatc 15628246  T
Q  204 agtgtaataaccagcaggaacagaagcatttgacctcaaactattgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagca 303  Q
    | | ||||| ||||||| |||| | || || ||  |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||    ||    
T  15628247 aatataatagccagcagtaacatatgctttggatttcaaaccattgatgtctataccaacatggttatcattaatatcatcaaacccaaagtctaagaca 15628346  T
Q  304 gtgtcaaactcaacagcaaaaatatggttagagaaattaccaaaaacattgcttgcattgaaaagaccaagatactgaataggtaaagctttgagatcct 403  Q
    |||||||| ||||||||||||| |||||| || ||||||||   |||||| || | ||||||||||||||||||||||| |||  || ||| ||||||||    
T  15628347 gtgtcaaattcaacagcaaaaagatggttcgaaaaattacc---aacattactcgaattgaaaagaccaagatactgaagaggcgaaccttcgagatcct 15628443  T
Q  404 ttgtaggggctattgtgaaagccatgccatgaccaccaactctaggatactcaggaacaac 464  Q
    | ||||  ||||||||||||||||||||||||||||| |   ||||||||||||| |||||    
T  15628444 tagtagttgctattgtgaaagccatgccatgaccacctatattaggatactcagggacaac 15628504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 17394086 - 17394032
Alignment:
Q  386 gtaaagctttgagatcctttgtaggggctattgtgaaagccatgccatgaccacc 440  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||| |||||||||||    
T  17394086 gtaaagctttgagatcctttgtagttgctatagtgaaagtcataccatgaccacc 17394032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 21150671 - 21150585
Alignment:
Q  246 attgatgtctataccaacatggttatcattaatatcatcaaactcaaaatcttgagcagtgtcaaactcaacagcaaaaatatggtt 332  Q
    |||||| || |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||    
T  21150671 attgatatcaataccaacatggttattattgatatcatcaaactcaaaatcttgaacagtgtcaagctcaacaccaaaaacatggtt 21150585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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