View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3672_low_3 (Length: 410)

Name: NF3672_low_3
Description: NF3672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3672_low_3
NF3672_low_3
[»] chr2 (1 HSPs)
chr2 (19-401)||(18617520-18617902)
[»] chr7 (2 HSPs)
chr7 (32-280)||(19239806-19240055)
chr7 (300-401)||(19241465-19241568)
[»] scaffold0003 (1 HSPs)
scaffold0003 (41-193)||(141776-141923)
[»] chr5 (5 HSPs)
chr5 (300-399)||(21185370-21185471)
chr5 (300-399)||(21629427-21629528)
chr5 (110-193)||(21620725-21620808)
chr5 (110-193)||(21628184-21628267)
chr5 (357-401)||(9688092-9688135)
[»] chr4 (1 HSPs)
chr4 (300-399)||(10232309-10232410)
[»] scaffold0925 (1 HSPs)
scaffold0925 (300-391)||(124-217)
[»] chr6 (1 HSPs)
chr6 (300-391)||(22389284-22389377)
[»] scaffold0081 (1 HSPs)
scaffold0081 (300-399)||(1623-1724)
[»] scaffold0116 (2 HSPs)
scaffold0116 (344-399)||(32397-32452)
scaffold0116 (344-388)||(41757-41801)
[»] scaffold0002 (2 HSPs)
scaffold0002 (110-189)||(392948-393027)
scaffold0002 (349-391)||(396720-396761)
[»] scaffold0253 (2 HSPs)
scaffold0253 (300-399)||(7841-7942)
scaffold0253 (300-399)||(17266-17367)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 18617902 - 18617520
Alignment:
Q  19 aatgcctcatctcgctccatgctcagcaactccagcgggatcatcaacaagtgaacaaaaggctcatgtggctctggtcctactggttcatgtgggacaa 118  Q
    |||||||| ||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18617902 aatgcctcctcctgctccatgctcaacaactccagcgggatcatcaacatgtgaacaaaaggctcatgtggctctggtcctactggttcatgtggaacaa 18617803  T
Q  119 cacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatctaaacggctgaccaccaagtcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18617802 cacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatctaaacggctgaccaccaagtcc 18617703  T
Q  219 cacagtaatacaaacaagtttggtgaagtacaacgtttgggttgccagattaatttcccaaacgtcagtcagtggttcctcaattaactctcacagataa 318  Q
    || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18617702 catagtaatacaaacaagtttggtgaagtacaacgtttgggatgccatattaatttcccaaacgtcattcagtggttcctcaattaactctcacagataa 18617603  T
Q  319 agttatttactcacataaacaatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacctttg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18617602 agttatttactcacataaacaatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacctttg 18617520  T

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Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 19239806 - 19240055
Alignment:
Q  32 gctccatgctcagcaactccagcgggatcatcaacaag-tgaacaaaaggctcatgtggctctggtcctactggttcatgtgggacaacacccatgtcat 130  Q
    ||||||| |||| ||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||||||| || || |||||||||||||||||||||    
T  19239806 gctccattctcatcaacttcagcgggatcatcaacatggtgaacaaagggctcacgtggctctggtcctactagtccaggtgggacaacacccatgtcat 19239905  T
Q  131 gaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatctaaacggctgaccaccaagtcccacagtaataca 230  Q
    ||||| |||||||||||| ||  ||||||||||| || || || |||| |||||||| ||||||| ||  |||||| |||||||||| || |||||| ||    
T  19239906 gaagagctaagtacaacctctacaatggtaaaattatttcaatagtctcatgagtaataatagatatagtcggctgtccaccaagtctcatagtaatcca 19240005  T
Q  231 aacaagtttggtgaagtacaacgtttgggttgccagattaatttcccaaa 280  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  19240006 aacaagttaggtgaagtacaatgtttgggttgccagatttatttcccaaa 19240055  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 19241465 - 19241568
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    |||||||||||||| ||| ||||||||| ||||||| |  ||||| |||| |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  19241465 aattaactctcacaaatagagttatttaatcacatataatcaattaagcacataacttatgcaaaatctttaacatttattagtagtaattccccttacc 19241564  T
Q  398 tttg 401  Q
    ||||    
T  19241565 tttg 19241568  T

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Target: scaffold0003 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 141923 - 141776
Alignment:
Q  41 tcagcaactccagcgggatcatcaaca-agtgaacaaaaggctcatgtggctctggtcctactggttcatgtgggacaacacccatgtcatgaagatcta 139  Q
    ||||||||  |||| |||||| ||||| || ||||||| ||||||||||| ||||||||||| |||      ||||||||||| |||||||| ||| |||    
T  141923 tcagcaacatcagcaggatcagcaacagagggaacaaagggctcatgtgggtctggtcctacgggt------gggacaacacctatgtcatggagagcta 141830  T
Q  140 agtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag 193  Q
     |||||||| ||| |||||||||||||||||| |||| | ||||||||||||||    
T  141829 ggtacaacctctgaaatggtaaaatcatctctgtggtttcatgagtaacaatag 141776  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 21185370 - 21185471
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||||| ||||||| |  || || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21185370 aattaactctcacaagtagagttatttagtcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccccttacc 21185469  T
Q  398 tt 399  Q
    ||    
T  21185470 tt 21185471  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 21629427 - 21629528
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||| ||||||||| |  || || |||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  21629427 aattaactctcacaagtagagttattgactcacatataatcacttaagcacataacttatgcaaaatctttaaaatttattagtagtaattccccttacc 21629526  T
Q  398 tt 399  Q
    ||    
T  21629527 tt 21629528  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 21620725 - 21620808
Alignment:
Q  110 gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag 193  Q
    |||||||||||||||||||||| ||| ||| |||||||| ||| ||||||| |||||||||| |||| | ||||||||||||||    
T  21620725 gtgggacaacacccatgtcatggagagctaggtacaacctctgaaatggtagaatcatctctgtggtttcatgagtaacaatag 21620808  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 21628184 - 21628267
Alignment:
Q  110 gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag 193  Q
    ||||||||||||||||||||||  || ||| |||||||| ||| ||||||| |||||||||| |||| | | ||||||||||||    
T  21628184 gtgggacaacacccatgtcatggggagctaggtacaacctctgaaatggtagaatcatctctgtggtttcacgagtaacaatag 21628267  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 9688092 - 9688135
Alignment:
Q  357 tgcaaaatctttaaaacttattagtagtaattccctttacctttg 401  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  9688092 tgcaaaatctttaaaacttattagtggtaatt-cctttacctttg 9688135  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 10232410 - 10232309
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||||||||||||| |  || || |||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10232410 aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaatttattagtagtaattccccttacc 10232311  T
Q  398 tt 399  Q
    ||    
T  10232310 tt 10232309  T

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Target: scaffold0925 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0925
Description:

Target: scaffold0925; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 217 - 124
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccc 391  Q
    |||||||||| |||  || ||||||||||||||||| |  || || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  217 aattaactcttacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccc 124  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 22389284 - 22389377
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccc 391  Q
    |||||||||| |||  || ||||||||||||||||| |  || || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  22389284 aattaactcttacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccc 22389377  T

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Target: scaffold0081 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 1623 - 1724
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||||||||| ||| |  || || |||| ||||||||||||||||||||||||| ||||||||||||||| | |||||    
T  1623 aattaactctcacaagtagagttatttactcagatataatcacttaagcacataacttatgcaaaatctttaaaacatattagtagtaattctccttacc 1722  T
Q  398 tt 399  Q
    ||    
T  1723 tt 1724  T

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Target: scaffold0116 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 32452 - 32397
Alignment:
Q  344 agcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacctt 399  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  32452 agcacataacttatacaaaatctttaaaacttattagtagtaattccccttacctt 32397  T

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Target: scaffold0116; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 41801 - 41757
Alignment:
Q  344 agcatataacttatgcaaaatctttaaaacttattagtagtaatt 388  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  41801 agcacataacttatgcaaaatctttaaaatttattagtagtaatt 41757  T

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Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 392948 - 393027
Alignment:
Q  110 gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaaca 189  Q
    |||||||||||||||||||||| ||| ||| |||||||| ||  ||||||| |||||||||| |||||| ||||||||||    
T  392948 gtgggacaacacccatgtcatggagagctaggtacaacctctacaatggtagaatcatctctgtggtctcatgagtaaca 393027  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 396720 - 396761
Alignment:
Q  349 ataacttatgcaaaatctttaaaacttattagtagtaattccc 391  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  396720 ataacttatgcaaa-tctttaaaacttattagtagtaattccc 396761  T

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Target: scaffold0253 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 7841 - 7942
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||||||||||||| |  || || |||| |||||||||| |||||||||||||| ||||| ||||||||| | |||||    
T  7841 aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgaaaaatctttaaaacatattattagtaattctccttacc 7940  T
Q  398 tt 399  Q
    ||    
T  7941 tt 7942  T

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Target: scaffold0253; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 17266 - 17367
Alignment:
Q  300 aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc 397  Q
    ||||||||||||||  || ||||||||||||||||| |  || || |||| |||||||||| |||||||||||||| ||||| ||||||||| | |||||    
T  17266 aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgaaaaatctttaaaacatattattagtaattctccttacc 17365  T
Q  398 tt 399  Q
    ||    
T  17366 tt 17367  T

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