View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3672_low_4 (Length: 303)
Name: NF3672_low_4
Description: NF3672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3672_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 937795 - 937490
Alignment:
| Q |
1 |
agaacgtagttcaatgtcttgtgaatgagaaaatactaacataacaacaaacatataacatttgtttatnnnnnnnn---tataattaacaatttccata |
97 |
Q |
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| T |
937795 |
agaacgtagttcaatgtcttgtgaatgagaaaatactaacataacaacaaatatataacatttgtttataaaaaaaaaaatataattaacaatttccata |
937696 |
T |
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| Q |
98 |
ttcaacatttgatatcaattttgcctatagtttctgacaannnnnnnnnnnnnnnnnactagcactattaacatggccttgcctggtaagcattatgatg |
197 |
Q |
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| T |
937695 |
ttcaacatttgatatcaattttgtctatagtttctgacaatttttttcttgttttttactagcactattaacatggccttgcctggtaagcattatgatg |
937596 |
T |
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| Q |
198 |
taccatcacacaaggaaattgaggtatttttcagagattggaataaaacaagcgaggaagataagaagaaaaatattttcattgatttcatgattaagaa |
297 |
Q |
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| T |
937595 |
taccatcacacaaggaaattgaggtatttttcagagattggaataaaacaagcgaggaagataagaagaaaaatattttcattgatttcatgattaagaa |
937496 |
T |
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| Q |
298 |
tgtaaa |
303 |
Q |
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| T |
937495 |
tgtaaa |
937490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 7584048 - 7584115
Alignment:
| Q |
155 |
actagcactattaacatggccttgcctggtaagcattatgatgtaccatcacacaaggaaattgaggt |
222 |
Q |
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| T |
7584048 |
actagcactatcaacatggcattgcgtggttagcatcatgatgtaccatcaaacaaggaaattgaggt |
7584115 |
T |
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