View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3672_low_5 (Length: 246)
Name: NF3672_low_5
Description: NF3672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3672_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8828631 - 8828860
Alignment:
| Q |
1 |
aacatatgaaatgtttacaactttttattatttcatctgcacttacgaaaccacttgttgtttattatcctacgagtgttataataatttagaatttatt |
100 |
Q |
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| T |
8828631 |
aacatatgaaatgtttacaactttttattatttcatctgcacttacgaaaccacttgttctttattatcttacgagtattataataatttaaaatttatt |
8828730 |
T |
|
| Q |
101 |
cac---aagagtattgctaacaacaaacattttaacgtacattttctaatcaattatgaaatataataattgccacactctaatacacactacatcgatc |
197 |
Q |
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||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
8828731 |
cacatgaagagtattgctaacaacaaacattttaacatacactttctaatcaattataaaatataataattgccacactctaatacacaccac----atc |
8828826 |
T |
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| Q |
198 |
agtttaatttcaaattaaatctaaactctttata |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8828827 |
agtttaatttcaaattaaatctaaactctttata |
8828860 |
T |
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